Variant report
Variant | rs72816902 |
---|---|
Chromosome Location | chr10:23045359-23045360 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr10:22989774..22994119-chr10:23044705..23049476,4 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10508653 | 0.95[EUR][1000 genomes] |
rs11013125 | 0.95[EUR][1000 genomes] |
rs12248702 | 0.95[EUR][1000 genomes] |
rs1343505 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1544228 | 0.95[ASN][1000 genomes] |
rs16922558 | 0.82[ASN][1000 genomes] |
rs16922574 | 0.82[ASN][1000 genomes] |
rs16922619 | 0.93[ASN][1000 genomes] |
rs16922627 | 0.93[ASN][1000 genomes] |
rs16922629 | 0.93[ASN][1000 genomes] |
rs16922631 | 0.93[ASN][1000 genomes] |
rs16922641 | 0.98[ASN][1000 genomes] |
rs16922673 | 1.00[ASN][1000 genomes] |
rs16922694 | 0.90[EUR][1000 genomes] |
rs2068726 | 0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2153534 | 0.91[ASN][1000 genomes] |
rs55855627 | 1.00[ASN][1000 genomes] |
rs56310787 | 0.90[EUR][1000 genomes] |
rs56412842 | 0.82[ASN][1000 genomes] |
rs57280862 | 0.88[ASN][1000 genomes] |
rs58587913 | 0.98[ASN][1000 genomes] |
rs58847346 | 0.81[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs59134467 | 0.82[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs59278361 | 0.87[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs59573145 | 0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs59908513 | 0.88[ASN][1000 genomes] |
rs60284138 | 0.82[ASN][1000 genomes] |
rs61295423 | 0.82[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs61587496 | 0.87[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs6482231 | 0.81[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6482237 | 0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs67864649 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7070712 | 0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs7078244 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73598599 | 0.93[ASN][1000 genomes] |
rs73598600 | 0.93[ASN][1000 genomes] |
rs73598601 | 0.93[ASN][1000 genomes] |
rs73600503 | 0.93[ASN][1000 genomes] |
rs74121608 | 0.98[ASN][1000 genomes] |
rs74121889 | 0.93[ASN][1000 genomes] |
rs74121891 | 0.93[ASN][1000 genomes] |
rs74121893 | 0.93[ASN][1000 genomes] |
rs74121894 | 0.93[ASN][1000 genomes] |
rs74121897 | 0.93[ASN][1000 genomes] |
rs74125205 | 0.93[ASN][1000 genomes] |
rs74125206 | 0.93[ASN][1000 genomes] |
rs7906229 | 0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs7917205 | 0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs9651370 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv831809 | chr10:22918101-23069676 | Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
2 | nsv550210 | chr10:23012096-23064702 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
3 | nsv550211 | chr10:23020350-23079385 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
4 | nsv550212 | chr10:23030282-23086690 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr10:23043000-23048200 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
2 | chr10:23043400-23045600 | Weak transcription | Brain Substantia Nigra | brain |
3 | chr10:23043400-23047000 | Weak transcription | Brain Cingulate Gyrus | brain |
4 | chr10:23043400-23050200 | Weak transcription | Brain Anterior Caudate | brain |
5 | chr10:23043600-23047200 | Weak transcription | Brain Hippocampus Middle | brain |