Variant report

Variant	rs12266776
Chromosome Location	chr10:23053796-23053797
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23052115..23054835-chr10:23068399..23071194,3	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10508648	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs10508649	1.00[GIH][hapmap]
rs10508653	0.83[ASN][1000 genomes]
rs11013123	1.00[ASN][1000 genomes]
rs11013124	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11013125	0.83[ASN][1000 genomes]
rs12240894	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12248702	0.83[ASN][1000 genomes]
rs12256270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12266336	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12267858	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922601	1.00[GIH][hapmap]
rs16922619	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs16922629	1.00[GIH][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16922641	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16922673	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16922694	0.83[ASN][1000 genomes]
rs16922697	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2032026	0.83[EUR][1000 genomes]
rs2032027	0.83[EUR][1000 genomes]
rs55855627	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56310787	1.00[ASN][1000 genomes]
rs58587913	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58854363	0.83[EUR][1000 genomes]
rs59134467	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59278361	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59760845	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61295423	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61587496	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7078735	1.00[GIH][hapmap]
rs74121608	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74121610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74121611	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74121869	0.83[EUR][1000 genomes]
rs74121889	0.83[EUR][1000 genomes]
rs74121891	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74121893	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74121894	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74121897	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74125205	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74125206	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7914338	1.00[GIH][hapmap]
rs9651370	0.91[ASN][1000 genomes]
rs9651372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv550210	chr10:23012096-23064702	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv550211	chr10:23020350-23079385	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv550212	chr10:23030282-23086690	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv894960	chr10:23049139-23113841	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv894961	chr10:23049139-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv466833	chr10:23050683-23110797	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv894962	chr10:23050683-23113841	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv894963	chr10:23050683-23121820	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv894964	chr10:23050683-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23052000-23057600	Enhancers	Brain Substantia Nigra	brain
2	chr10:23053000-23054000	Enhancers	Aorta	Aorta
3	chr10:23053000-23057000	Enhancers	Primary B cells from peripheral blood	blood
4	chr10:23053200-23053800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:23053200-23054000	Enhancers	Brain Anterior Caudate	brain
6	chr10:23053200-23054000	Enhancers	Brain Hippocampus Middle	brain
7	chr10:23053200-23054200	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr10:23053400-23054000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:23053400-23054000	Enhancers	Brain Cingulate Gyrus	brain
10	chr10:23053400-23054200	Enhancers	Adipose Nuclei	Adipose
11	chr10:23053400-23054200	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr10:23053400-23054200	Enhancers	Duodenum Mucosa	Duodenum
13	chr10:23053400-23054200	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr10:23053400-23056400	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr10:23053400-23057400	Enhancers	Colon Smooth Muscle	Colon
16	chr10:23053600-23053800	Enhancers	Brain Angular Gyrus	brain
17	chr10:23053600-23054000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:23053600-23054000	Enhancers	Fetal Stomach	stomach
19	chr10:23053600-23054800	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr10:23053600-23056400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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