Variant report

Variant	rs9658062
Chromosome Location	chr6:35313717-35313718
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35308697..35314051-chr6:35417510..35421585,8	K562	blood:
2	chr6:35312994..35314809-chr6:35435389..35437566,2	MCF-7	breast:
3	chr6:35312327..35314525-chr6:35320583..35322844,2	K562	blood:
4	chr6:35310212..35313058-chr6:35313527..35317832,4	MCF-7	breast:
5	chr6:35313010..35315101-chr6:35358696..35360366,2	MCF-7	breast:
6	chr6:35309215..35314259-chr6:35432456..35439068,10	MCF-7	breast:
7	chr6:35310869..35315599-chr6:35463091..35467750,4	K562	blood:
8	chr6:35311203..35312769-chr6:35313218..35316156,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000112033	Chromatin interaction
ENSG00000112039	Chromatin interaction
ENSG00000007866	Chromatin interaction
ENSG00000198755	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11571503	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2284197	0.86[EUR][1000 genomes]
rs61415782	1.00[EUR][1000 genomes]
rs73745161	1.00[EUR][1000 genomes]
rs73748060	1.00[EUR][1000 genomes]
rs9469989	1.00[EUR][1000 genomes]
rs9658107	1.00[EUR][1000 genomes]
rs9658114	1.00[EUR][1000 genomes]
rs9658115	1.00[EUR][1000 genomes]
rs9658128	1.00[EUR][1000 genomes]
rs9658133	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9658143	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9658147	0.86[EUR][1000 genomes]
rs9658176	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35311400-35314200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr6:35311400-35314400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:35311400-35314600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:35311400-35316200	Weak transcription	Pancreas	Pancrea
5	chr6:35311400-35320600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:35311400-35323800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:35311400-35326800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:35311600-35314600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:35311600-35316000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:35311600-35316200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:35311600-35320400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:35311600-35323800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr6:35311600-35324200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr6:35311600-35327600	Weak transcription	A549	lung
15	chr6:35311800-35314000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:35311800-35314000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:35311800-35314600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr6:35311800-35314800	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr6:35311800-35316600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr6:35311800-35318400	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr6:35311800-35320600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:35311800-35324000	Weak transcription	Right Atrium	heart
23	chr6:35311800-35331000	Weak transcription	Hela-S3	cervix
24	chr6:35312000-35314000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr6:35312000-35314000	Weak transcription	Colonic Mucosa	Colon
26	chr6:35312000-35314000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr6:35312000-35315800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr6:35312000-35318400	Genic enhancers	Primary B cells from peripheral blood	blood
29	chr6:35312000-35328200	Weak transcription	Stomach Mucosa	stomach
30	chr6:35312200-35314000	Weak transcription	Dnd41	blood
31	chr6:35312200-35315000	Genic enhancers	Primary B cells from cord blood	blood
32	chr6:35312200-35316200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr6:35312200-35318200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
34	chr6:35312200-35326400	Weak transcription	Fetal Brain Female	brain
35	chr6:35312400-35314000	Genic enhancers	Primary T cells from cord blood	blood
36	chr6:35312400-35314000	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr6:35312400-35314200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:35312400-35314200	Weak transcription	Aorta	Aorta
39	chr6:35312400-35314200	Weak transcription	HUVEC	blood vessel
40	chr6:35312400-35314800	Strong transcription	Fetal Intestine Small	intestine
41	chr6:35312400-35314800	Genic enhancers	Placenta	Placenta
42	chr6:35312400-35315000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
43	chr6:35312400-35315200	Genic enhancers	Fetal Muscle Leg	muscle
44	chr6:35312400-35315200	Transcr. at gene 5' and 3'	Psoas Muscle	Psoas
45	chr6:35312400-35317600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr6:35312600-35314000	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr6:35312600-35314200	Weak transcription	Ovary	ovary
48	chr6:35312600-35314400	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr6:35312600-35314800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr6:35312600-35314800	Genic enhancers	HSMM	muscle

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