Variant report

Variant	rs73745161
Chromosome Location	chr6:35248449-35248450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr6:35248411-35248994	U2OS	brain:	n/a	n/a
2	ZNF263	chr6:35247554-35249060	HEK293-T-REx	kidney:	n/a	n/a
3	KAP1	chr6:35248405-35249091	HEK293	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35213830..35215728-chr6:35248385..35249951,2	K562	blood:
2	chr6:35248152..35248864-chr6:35261794..35262438,2	K562	blood:

Variant related genes	Relation type
ENSG00000217004	TF binding region

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11571503	1.00[EUR][1000 genomes]
rs2284197	0.86[EUR][1000 genomes]
rs61415782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73748060	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9469989	1.00[EUR][1000 genomes]
rs9658062	1.00[EUR][1000 genomes]
rs9658107	1.00[EUR][1000 genomes]
rs9658114	1.00[EUR][1000 genomes]
rs9658115	1.00[EUR][1000 genomes]
rs9658128	1.00[EUR][1000 genomes]
rs9658133	1.00[EUR][1000 genomes]
rs9658143	1.00[EUR][1000 genomes]
rs9658147	0.86[EUR][1000 genomes]
rs9658176	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35228400-35250200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:35228600-35248800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr6:35228600-35253200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:35228800-35248800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr6:35228800-35248800	Weak transcription	Spleen	Spleen
6	chr6:35228800-35249000	Weak transcription	Fetal Intestine Large	intestine
7	chr6:35228800-35249000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:35228800-35251400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:35229000-35248800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr6:35229000-35248800	Weak transcription	Thymus	Thymus
11	chr6:35229000-35249000	Weak transcription	Liver	Liver
12	chr6:35229000-35250400	Weak transcription	Fetal Brain Male	brain
13	chr6:35229200-35248800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr6:35229200-35248800	Weak transcription	Dnd41	blood
15	chr6:35229200-35250200	Weak transcription	Pancreas	Pancrea
16	chr6:35232200-35248600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr6:35232200-35248800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr6:35232400-35248800	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr6:35232400-35250200	Weak transcription	Primary hematopoietic stem cells	blood
20	chr6:35232600-35265200	Weak transcription	Stomach Mucosa	stomach
21	chr6:35232800-35248800	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr6:35232800-35248800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:35232800-35249000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr6:35233600-35248800	Weak transcription	Primary B cells from cord blood	blood
25	chr6:35233800-35258400	Weak transcription	Small Intestine	intestine
26	chr6:35236200-35248800	Weak transcription	Primary B cells from peripheral blood	blood
27	chr6:35236200-35248800	Weak transcription	GM12878-XiMat	blood
28	chr6:35236400-35249000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:35237600-35248600	Weak transcription	Fetal Thymus	thymus
30	chr6:35237800-35253400	Weak transcription	Gastric	stomach
31	chr6:35237800-35264800	Weak transcription	K562	blood
32	chr6:35239000-35248800	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr6:35240400-35248800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:35240600-35248600	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr6:35242400-35248800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr6:35242400-35248800	Weak transcription	Fetal Intestine Small	intestine
37	chr6:35242600-35248800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr6:35243200-35250000	Weak transcription	HSMMtube	muscle
39	chr6:35243200-35250200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr6:35243400-35248800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr6:35243400-35248800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr6:35243400-35248800	Weak transcription	Esophagus	oesophagus
43	chr6:35243400-35248800	Weak transcription	Fetal Muscle Leg	muscle
44	chr6:35243400-35248800	Weak transcription	Fetal Stomach	stomach
45	chr6:35243400-35248800	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr6:35243400-35249200	Weak transcription	Fetal Brain Female	brain
47	chr6:35243400-35256800	Weak transcription	NHEK	skin
48	chr6:35243400-35265000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr6:35243600-35248800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr6:35243600-35248800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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