Variant report

Variant	rs9658115
Chromosome Location	chr6:35365046-35365047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35360599..35362739-chr6:35363627..35365707,2	K562	blood:
2	chr6:35364935..35367587-chr6:35369436..35372009,4	K562	blood:
3	chr6:35364935..35367619-chr6:35369623..35372118,3	K562	blood:
4	chr6:35364744..35367159-chr6:35371168..35373202,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11571503	1.00[EUR][1000 genomes]
rs2284197	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61415782	1.00[EUR][1000 genomes]
rs73745161	1.00[EUR][1000 genomes]
rs73748060	1.00[EUR][1000 genomes]
rs7746988	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs9469989	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9658062	1.00[EUR][1000 genomes]
rs9658107	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9658114	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9658128	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9658133	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9658143	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9658147	1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs9658176	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv462907	chr6:35333799-35408959	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv602908	chr6:35333799-35408959	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv602909	chr6:35356640-35423489	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35338400-35378400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:35345600-35378400	Weak transcription	Aorta	Aorta
3	chr6:35354000-35372400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:35359600-35369200	Weak transcription	Fetal Kidney	kidney
5	chr6:35359800-35378800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:35360000-35366400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr6:35360000-35378200	Weak transcription	Colon Smooth Muscle	Colon
8	chr6:35360000-35378400	Weak transcription	HSMMtube	muscle
9	chr6:35360000-35379000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:35360000-35382600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:35360400-35372000	Weak transcription	Brain Angular Gyrus	brain
12	chr6:35360400-35372200	Weak transcription	Brain Hippocampus Middle	brain
13	chr6:35360600-35365200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:35360600-35372400	Weak transcription	Brain Anterior Caudate	brain
15	chr6:35360600-35378600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr6:35360800-35367800	Weak transcription	Liver	Liver
17	chr6:35361000-35365400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:35361000-35378000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr6:35361000-35378600	Weak transcription	Adipose Nuclei	Adipose
20	chr6:35361000-35378600	Weak transcription	NHLF	lung
21	chr6:35361000-35378800	Weak transcription	Psoas Muscle	Psoas
22	chr6:35361200-35376200	Weak transcription	Fetal Muscle Trunk	muscle
23	chr6:35361200-35378600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr6:35361400-35367800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr6:35361600-35365600	Weak transcription	Colonic Mucosa	Colon
26	chr6:35361800-35367800	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr6:35361800-35385800	Weak transcription	Small Intestine	intestine
28	chr6:35362000-35368800	Weak transcription	Right Ventricle	heart
29	chr6:35362000-35378000	Weak transcription	Spleen	Spleen
30	chr6:35362200-35367800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr6:35362200-35368600	Weak transcription	Lung	lung
32	chr6:35362200-35378400	Weak transcription	Primary B cells from cord blood	blood
33	chr6:35362200-35378400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr6:35362200-35380000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr6:35362600-35368800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr6:35362800-35368000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr6:35362800-35370200	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr6:35363000-35365200	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr6:35363000-35365200	Enhancers	Pancreas	Pancrea
40	chr6:35363000-35369200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr6:35363200-35365400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr6:35363200-35365600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr6:35363400-35365600	Weak transcription	Esophagus	oesophagus
44	chr6:35363400-35378200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr6:35363600-35369000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr6:35363800-35368000	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr6:35363800-35371600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr6:35364000-35378000	Weak transcription	Primary B cells from peripheral blood	blood
49	chr6:35364400-35365400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr6:35364600-35365200	Enhancers	Ovary	ovary

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