Variant report

Variant	rs9658133
Chromosome Location	chr6:35378761-35378762
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35376249..35378829-chr6:35387490..35390068,2	K562	blood:
2	chr6:35376688..35379327-chr6:35465068..35467470,3	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11571503	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2284197	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs61415782	1.00[EUR][1000 genomes]
rs73745161	1.00[EUR][1000 genomes]
rs73748060	1.00[EUR][1000 genomes]
rs7746988	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs9469989	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9658062	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9658107	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9658114	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9658115	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9658128	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs9658143	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9658147	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs9658176	1.00[GIH][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv462907	chr6:35333799-35408959	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv602908	chr6:35333799-35408959	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv602909	chr6:35356640-35423489	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv470812	chr6:35374461-35418118	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv528351	chr6:35377922-35465786	Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35359800-35378800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:35360000-35379000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:35360000-35382600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:35361000-35378800	Weak transcription	Psoas Muscle	Psoas
5	chr6:35361800-35385800	Weak transcription	Small Intestine	intestine
6	chr6:35362200-35380000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:35366200-35386800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:35366400-35382800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr6:35369200-35378800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:35369200-35379000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:35369200-35382600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:35369400-35382600	Weak transcription	NH-A	brain
13	chr6:35370600-35393200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:35371000-35378800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr6:35371000-35382400	Weak transcription	Right Atrium	heart
16	chr6:35371200-35378800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr6:35371200-35382400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr6:35371200-35382400	Weak transcription	Stomach Mucosa	stomach
19	chr6:35371200-35383200	Weak transcription	Fetal Kidney	kidney
20	chr6:35372000-35382400	Weak transcription	Fetal Heart	heart
21	chr6:35373200-35381400	Weak transcription	Fetal Brain Male	brain
22	chr6:35373400-35382400	Weak transcription	Brain Germinal Matrix	brain
23	chr6:35374000-35380400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:35375200-35378800	Weak transcription	Right Ventricle	heart
25	chr6:35375200-35382600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr6:35375600-35387000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr6:35376000-35380000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:35376400-35378800	Weak transcription	Brain Angular Gyrus	brain
29	chr6:35376400-35379000	Weak transcription	HMEC	breast
30	chr6:35376400-35379000	Weak transcription	HSMM	muscle
31	chr6:35376400-35379000	Strong transcription	NHEK	skin
32	chr6:35376400-35379200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:35377000-35378800	Weak transcription	Dnd41	blood
34	chr6:35377000-35379000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:35377400-35379000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr6:35377400-35379000	Weak transcription	Fetal Brain Female	brain
37	chr6:35377400-35379200	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr6:35377400-35379200	Weak transcription	Fetal Lung	lung
39	chr6:35377600-35379200	Genic enhancers	Placenta	Placenta
40	chr6:35377600-35380200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:35377600-35381200	Strong transcription	Liver	Liver
42	chr6:35377600-35382400	Strong transcription	Fetal Muscle Leg	muscle
43	chr6:35377600-35382400	Strong transcription	Osteobl	bone
44	chr6:35377600-35386000	Weak transcription	HUVEC	blood vessel
45	chr6:35377800-35385600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr6:35377800-35395000	Weak transcription	K562	blood
47	chr6:35378000-35378800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr6:35378000-35379200	Enhancers	Primary T helper naive cells from peripheral blood	blood
49	chr6:35378000-35379600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr6:35378000-35380000	Genic enhancers	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links