Variant report
| Variant | rs9729724 |
|---|---|
| Chromosome Location | chr1:216333820-216333821 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:216333170..216335815-chr1:216426543..216429125,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs11120760 | 1.00[CEU][hapmap] |
| rs17597445 | 1.00[CHB][hapmap] |
| rs17647012 | 1.00[AFR][1000 genomes] |
| rs17649639 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2926178 | 1.00[CHB][hapmap] |
| rs301743 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs301748 | 1.00[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs301749 | 0.86[ASN][1000 genomes] |
| rs301751 | 1.00[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs301753 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs301755 | 1.00[CHB][hapmap] |
| rs301756 | 1.00[CHB][hapmap] |
| rs301757 | 1.00[CHB][hapmap] |
| rs301758 | 1.00[CHB][hapmap] |
| rs3106400 | 1.00[CHB][hapmap] |
| rs368107 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs386851 | 1.00[CHB][hapmap] |
| rs400358 | 1.00[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs403340 | 1.00[CHB][hapmap] |
| rs414373 | 1.00[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs446247 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs448588 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs449118 | 1.00[CHB][hapmap] |
| rs452747 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs453273 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs471271 | 1.00[CHB][hapmap] |
| rs551895 | 1.00[ASN][1000 genomes] |
| rs56219666 | 1.00[AFR][1000 genomes] |
| rs594799 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs619803 | 0.86[ASN][1000 genomes] |
| rs656949 | 1.00[CHB][hapmap] |
| rs658740 | 1.00[CHB][hapmap] |
| rs682319 | 1.00[CHB][hapmap] |
| rs687476 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs7413858 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1006504 | chr1:215890460-216642124 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv535288 | chr1:215890460-216642124 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv873176 | chr1:216249570-216363137 | Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1006028 | chr1:216268796-216432545 | Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
