Variant report

Variant	rs9789426
Chromosome Location	chr2:55350111-55350112
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:55347589..55350399-chr2:55353012..55356550,3	K562	blood:
2	chr2:55273963..55277742-chr2:55344682..55351127,9	K562	blood:
3	chr2:55348151..55351160-chr2:55366268..55368623,3	K562	blood:
4	chr2:55350017..55352674-chr2:55360663..55363208,2	K562	blood:
5	chr2:55287127..55289595-chr2:55348601..55351225,2	K562	blood:
6	chr2:55347566..55351333-chr2:55355556..55357913,4	K562	blood:
7	chr2:55274620..55276240-chr2:55348004..55351084,3	K562	blood:
8	chr2:55319141..55322072-chr2:55348443..55351423,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000115310	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11892071	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2920844	0.81[ASN][1000 genomes]
rs2968781	0.81[ASN][1000 genomes]
rs55691469	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55875262	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56056614	0.92[EUR][1000 genomes]
rs56073856	0.92[EUR][1000 genomes]
rs56231606	0.92[EUR][1000 genomes]
rs56285641	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58680169	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6721769	0.92[EUR][1000 genomes]
rs6721928	0.92[EUR][1000 genomes]
rs72795491	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72795493	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72795498	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72795499	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72797513	0.92[EUR][1000 genomes]
rs72797515	0.92[EUR][1000 genomes]
rs72797516	0.92[EUR][1000 genomes]
rs72797517	0.92[EUR][1000 genomes]
rs72797519	0.91[EUR][1000 genomes]
rs72797522	0.92[EUR][1000 genomes]
rs72797530	0.92[EUR][1000 genomes]
rs72797534	0.92[EUR][1000 genomes]
rs72797535	0.92[EUR][1000 genomes]
rs72797536	0.92[EUR][1000 genomes]
rs72797537	0.92[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9789426	FLJ31438	Cis_1M	lymphoblastoid	RTeQTL
rs9789426	CLHC1	cis	Artery Tibial	GTEx

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55337200-55351000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:55339400-55351000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:55342400-55350200	Enhancers	Fetal Heart	heart
4	chr2:55344400-55350200	Enhancers	Brain Cingulate Gyrus	brain
5	chr2:55344400-55350600	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr2:55345400-55350200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr2:55345400-55350200	Enhancers	Brain Angular Gyrus	brain
8	chr2:55345600-55350200	Enhancers	Brain Germinal Matrix	brain
9	chr2:55345600-55350200	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr2:55345600-55350400	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr2:55346000-55351600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr2:55346600-55350800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr2:55346800-55350200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr2:55347400-55351000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr2:55347400-55351000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr2:55347400-55351000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr2:55347600-55360600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr2:55347800-55351000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr2:55348000-55350400	Enhancers	Brain Anterior Caudate	brain
20	chr2:55348000-55351000	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr2:55348000-55351000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr2:55348200-55351200	Weak transcription	Fetal Intestine Small	intestine
23	chr2:55348200-55360600	Weak transcription	Stomach Mucosa	stomach
24	chr2:55348400-55350200	Enhancers	Brain Hippocampus Middle	brain
25	chr2:55348400-55350200	Enhancers	Brain Substantia Nigra	brain
26	chr2:55348400-55350200	Enhancers	K562	blood
27	chr2:55348400-55351000	Weak transcription	Fetal Intestine Large	intestine
28	chr2:55348400-55360400	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr2:55348600-55350200	Enhancers	Muscle Satellite Cultured Cells	--
30	chr2:55348600-55350800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr2:55348600-55351000	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr2:55348600-55360800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr2:55348800-55351000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr2:55348800-55351000	Weak transcription	HSMMtube	muscle
35	chr2:55348800-55360400	Weak transcription	NHDF-Ad	bronchial
36	chr2:55349400-55350200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr2:55349600-55350200	Enhancers	Adipose Nuclei	Adipose
38	chr2:55349600-55351000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr2:55349600-55351600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr2:55349800-55360600	Weak transcription	Fetal Stomach	stomach
41	chr2:55350000-55351000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr2:55350000-55351000	Weak transcription	Aorta	Aorta
43	chr2:55350000-55351200	Weak transcription	Left Ventricle	heart
44	chr2:55350000-55352400	Weak transcription	Pancreas	Pancrea
45	chr2:55350000-55355200	Weak transcription	Fetal Muscle Leg	muscle
46	chr2:55350000-55360600	Weak transcription	Psoas Muscle	Psoas
47	chr2:55350000-55360800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr2:55350000-55360800	Weak transcription	Lung	lung
49	chr2:55350000-55360800	Weak transcription	Ovary	ovary

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