Variant report

Variant	rs72797537
Chromosome Location	chr2:55371720-55371721
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:55371026..55375430-chr2:55375600..55379751,6	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10194457	0.90[ASN][1000 genomes]
rs11892071	0.89[EUR][1000 genomes]
rs4233958	0.90[ASN][1000 genomes]
rs4672022	0.90[ASN][1000 genomes]
rs55691469	0.98[EUR][1000 genomes]
rs55875262	0.92[EUR][1000 genomes]
rs56056614	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56073856	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56231606	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56285641	0.91[EUR][1000 genomes]
rs58680169	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6721769	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6721928	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6731596	0.90[ASN][1000 genomes]
rs6745066	0.91[ASN][1000 genomes]
rs72795491	0.92[EUR][1000 genomes]
rs72795493	0.92[EUR][1000 genomes]
rs72795498	0.92[EUR][1000 genomes]
rs72795499	0.86[EUR][1000 genomes]
rs72797513	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72797515	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72797516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72797517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72797519	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72797522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72797530	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72797534	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72797535	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72797536	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7575639	0.90[ASN][1000 genomes]
rs7585618	0.90[ASN][1000 genomes]
rs9789426	0.92[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs72797537	CLHC1	cis	Artery Tibial	GTEx
rs72797537	CLHC1	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55361800-55373000	Weak transcription	HSMMtube	muscle
2	chr2:55361800-55378600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr2:55365200-55381000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:55365600-55378600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr2:55366200-55378600	Weak transcription	Colon Smooth Muscle	Colon
6	chr2:55366800-55373400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr2:55367200-55378800	Weak transcription	Placenta	Placenta
8	chr2:55367800-55375000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr2:55369600-55374600	Weak transcription	Hela-S3	cervix
10	chr2:55369800-55374800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr2:55369800-55378200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr2:55369800-55378600	Weak transcription	Fetal Stomach	stomach
13	chr2:55370000-55372600	Weak transcription	Stomach Mucosa	stomach
14	chr2:55370000-55375600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr2:55370000-55379600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr2:55370600-55371800	Weak transcription	K562	blood
17	chr2:55371600-55382400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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