Variant report

Variant	rs4233958
Chromosome Location	chr2:55368717-55368718
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:55272140..55279868-chr2:55356344..55371606,28	K562	blood:
2	chr2:55366681..55370422-chr2:55372358..55376649,9	K562	blood:
3	chr2:55362876..55365443-chr2:55367028..55369648,3	MCF-7	breast:
4	chr2:55275938..55279901-chr2:55364740..55369438,15	K562	blood:
5	chr2:55366338..55369324-chr2:55384110..55386041,3	K562	blood:
6	chr2:55366570..55369324-chr2:55383738..55386041,2	K562	blood:
7	chr2:55356536..55358953-chr2:55366284..55369182,2	K562	blood:
8	chr2:55366215..55370313-chr2:55376970..55382641,6	K562	blood:
9	chr2:55366215..55370139-chr2:55381125..55383848,4	K562	blood:
10	chr2:55344367..55347078-chr2:55367240..55368928,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000115310	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10194457	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11892071	0.81[JPT][hapmap]
rs12713288	0.84[CHB][hapmap];0.82[ASN][1000 genomes]
rs4672022	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56056614	0.90[ASN][1000 genomes]
rs56073856	0.90[ASN][1000 genomes]
rs56231606	0.90[ASN][1000 genomes]
rs58680169	0.85[ASN][1000 genomes]
rs6721769	0.90[ASN][1000 genomes]
rs6721928	0.90[ASN][1000 genomes]
rs6725139	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6731596	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6745066	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72797513	0.89[ASN][1000 genomes]
rs72797515	0.89[ASN][1000 genomes]
rs72797516	0.89[ASN][1000 genomes]
rs72797517	0.89[ASN][1000 genomes]
rs72797519	0.89[ASN][1000 genomes]
rs72797522	0.89[ASN][1000 genomes]
rs72797530	0.90[ASN][1000 genomes]
rs72797534	0.90[ASN][1000 genomes]
rs72797535	0.90[ASN][1000 genomes]
rs72797536	0.90[ASN][1000 genomes]
rs72797537	0.90[ASN][1000 genomes]
rs7575639	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7585618	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55361400-55370200	Enhancers	Fetal Intestine Large	intestine
2	chr2:55361800-55368800	Weak transcription	A549	lung
3	chr2:55361800-55373000	Weak transcription	HSMMtube	muscle
4	chr2:55361800-55378600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr2:55362200-55369000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr2:55362400-55368800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr2:55363600-55368800	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr2:55363800-55370400	Enhancers	Duodenum Mucosa	Duodenum
9	chr2:55364200-55369000	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr2:55364800-55369000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr2:55365200-55369000	Flanking Active TSS	K562	blood
12	chr2:55365200-55369200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr2:55365200-55381000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr2:55365600-55378600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr2:55365800-55369000	Enhancers	Brain Angular Gyrus	brain
16	chr2:55365800-55369000	Enhancers	Brain Cingulate Gyrus	brain
17	chr2:55366200-55368800	Weak transcription	Fetal Stomach	stomach
18	chr2:55366200-55378600	Weak transcription	Colon Smooth Muscle	Colon
19	chr2:55366400-55368800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr2:55366600-55369200	Weak transcription	Fetal Lung	lung
21	chr2:55366800-55368800	Enhancers	Brain Hippocampus Middle	brain
22	chr2:55366800-55369400	Enhancers	Brain Anterior Caudate	brain
23	chr2:55366800-55373400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr2:55367000-55368800	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr2:55367000-55368800	Enhancers	Primary hematopoietic stem cells	blood
26	chr2:55367000-55368800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr2:55367200-55368800	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr2:55367200-55370000	Enhancers	Brain Substantia Nigra	brain
29	chr2:55367200-55378800	Weak transcription	Placenta	Placenta
30	chr2:55367600-55368800	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr2:55367600-55369400	Enhancers	Rectal Mucosa Donor 29	rectum
32	chr2:55367600-55369400	Enhancers	Dnd41	blood
33	chr2:55367600-55369800	Enhancers	Fetal Intestine Small	intestine
34	chr2:55367600-55370000	Enhancers	Stomach Mucosa	stomach
35	chr2:55367800-55375000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr2:55368000-55369000	Weak transcription	Hela-S3	cervix
37	chr2:55368200-55368800	Enhancers	Lung	lung
38	chr2:55368200-55369400	Enhancers	Esophagus	oesophagus
39	chr2:55368200-55369400	Enhancers	Right Atrium	heart
40	chr2:55368400-55369200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr2:55368400-55369800	Enhancers	Small Intestine	intestine
42	chr2:55368400-55370000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr2:55368400-55370000	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr2:55368600-55369400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr2:55368600-55369400	Enhancers	Pancreas	Pancrea
46	chr2:55368600-55369800	Enhancers	Stomach Smooth Muscle	stomach
47	chr2:55368600-55369800	Bivalent Enhancer	HepG2	liver
48	chr2:55368600-55370000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr2:55368600-55370000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr2:55368600-55370000	Enhancers	Sigmoid Colon	Sigmoid Colon

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