The 2.0 version of rSNPBase

Variant report

Variant rs56073856
Chromosome Location chr2:55363453-55363454
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:101 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:55361000-55364000 Weak transcription Left Ventricle heart
2 chr2:55361200-55364400 Weak transcription Right Ventricle heart
3 chr2:55361200-55365400 Enhancers Fetal Intestine Small intestine
4 chr2:55361400-55366400 Enhancers Primary hematopoietic stem cells short term culture blood
5 chr2:55361400-55370200 Enhancers Fetal Intestine Large intestine
6 chr2:55361600-55364000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
7 chr2:55361600-55364000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
8 chr2:55361600-55364200 Enhancers iPS-15b Cell Line embryonic stem cell
9 chr2:55361600-55364200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
10 chr2:55361600-55364400 Enhancers Brain Inferior Temporal Lobe brain
11 chr2:55361600-55365200 Enhancers K562 blood
12 chr2:55361600-55365400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
13 chr2:55361600-55366000 Enhancers Primary hematopoietic stem cells blood
14 chr2:55361600-55368200 Weak transcription Esophagus oesophagus
15 chr2:55361800-55363600 Enhancers Primary T cells fromperipheralblood blood
16 chr2:55361800-55363600 Enhancers Brain Substantia Nigra brain
17 chr2:55361800-55363800 Weak transcription Rectal Smooth Muscle rectum
18 chr2:55361800-55364000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
19 chr2:55361800-55364000 Enhancers Primary T helper naive cells fromperipheralblood blood
20 chr2:55361800-55364400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
21 chr2:55361800-55365000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
22 chr2:55361800-55365200 Enhancers Brain Germinal Matrix brain
23 chr2:55361800-55365200 Weak transcription Fetal Heart heart
24 chr2:55361800-55366800 Enhancers Rectal Mucosa Donor 31 rectum
25 chr2:55361800-55366800 Weak transcription Hela-S3 cervix
26 chr2:55361800-55367800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
27 chr2:55361800-55368000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr2:55361800-55368600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
29 chr2:55361800-55368800 Weak transcription A549 lung
30 chr2:55361800-55373000 Weak transcription HSMMtube muscle
31 chr2:55361800-55378600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
32 chr2:55362000-55363600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
33 chr2:55362000-55363600 Weak transcription Fetal Stomach stomach
34 chr2:55362000-55364000 Weak transcription Fetal Muscle Trunk muscle
35 chr2:55362000-55364200 Enhancers Primary T helper cells PMA-I stimulated --
36 chr2:55362000-55365200 Weak transcription Fetal Brain Female brain
37 chr2:55362000-55366600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr2:55362000-55366600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
39 chr2:55362200-55363600 Weak transcription Primary B cells from cord blood blood
40 chr2:55362200-55363600 Weak transcription Fetal Muscle Leg muscle
41 chr2:55362200-55363800 Weak transcription HUES64 Cell Line embryonic stem cell
42 chr2:55362200-55364000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
43 chr2:55362200-55364000 Weak transcription H9 Cell Line embryonic stem cell
44 chr2:55362200-55364000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
45 chr2:55362200-55364000 Weak transcription Colonic Mucosa Colon
46 chr2:55362200-55364000 Weak transcription Gastric stomach
47 chr2:55362200-55364000 Weak transcription Spleen Spleen
48 chr2:55362200-55364200 Weak transcription HUES6 Cell Line embryonic stem cell
49 chr2:55362200-55364400 Weak transcription HUES48 Cell Line embryonic stem cell
50 chr2:55362200-55364400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung

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Last update: Aug 31, 2015