Variant report

Variant	rs9809176
Chromosome Location	chr3:23282061-23282062
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs1013460	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1027379	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1032499	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs11129113	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11129116	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11708117	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11708176	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11717397	0.81[ASN][1000 genomes]
rs11720461	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11920019	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12330262	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12330479	0.86[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12493361	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12496983	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12497974	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12629848	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13074192	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs13080261	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13080401	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13081371	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13321359	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs13326048	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1353322	0.89[YRI][hapmap]
rs1495131	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1532355	0.86[ASN][1000 genomes]
rs1552930	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1692617	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs1692651	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1695171	1.00[CHB][hapmap]
rs17012812	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17012869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1874235	0.83[ASN][1000 genomes]
rs1973400	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2055154	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2172828	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2359759	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs2359763	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs3104243	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs34919006	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4241511	1.00[CEU][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4488778	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4858062	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4858064	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4858074	0.83[YRI][hapmap]
rs4858483	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4858484	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4858491	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4858492	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4858496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4858497	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4858500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4858501	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4858502	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4858504	0.82[YRI][hapmap]
rs4858506	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4858508	0.83[ASN][1000 genomes]
rs59429714	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6550746	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6550748	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6550755	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs6550756	1.00[CHB][hapmap];0.84[JPT][hapmap];0.93[YRI][hapmap];0.81[ASN][1000 genomes]
rs6769173	1.00[CHB][hapmap];0.84[JPT][hapmap];0.86[YRI][hapmap]
rs6784195	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6784771	0.83[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6795492	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6796840	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs6804123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6805889	0.94[CHB][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap]
rs716457	1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs7429470	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7617072	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7622784	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7631334	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs778459	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs778460	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[YRI][hapmap]
rs778462	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs778468	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs778470	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs778471	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs778486	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs778494	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs778506	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs778508	0.94[CHB][hapmap]
rs9310715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9816895	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9821101	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9822422	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9825778	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9826089	0.82[ASN][1000 genomes]
rs9826647	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs9826877	0.94[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9836787	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.97[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9839738	0.94[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap]
rs9841123	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.97[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9841944	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9846398	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9847027	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9847958	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9848077	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9849176	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9853489	1.00[CEU][hapmap];0.94[CHB][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9854148	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9854590	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.97[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9859515	0.83[ASN][1000 genomes]
rs9859651	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9861803	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9864908	0.81[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.97[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9865602	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9873317	0.93[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs9874082	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9874519	0.81[ASN][1000 genomes]
rs9874822	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9881332	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv589947	chr3:23277838-23403943	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1002823	chr3:23277838-23623083	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3332651	chr3:23281828-23282422	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23272600-23283000	Weak transcription	HMEC	breast
2	chr3:23274600-23283000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr3:23274800-23298200	Weak transcription	Aorta	Aorta
4	chr3:23278600-23289600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:23278800-23283000	Weak transcription	Left Ventricle	heart
6	chr3:23279400-23282800	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr3:23279800-23282800	Enhancers	Brain Angular Gyrus	brain
8	chr3:23280000-23282800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr3:23280000-23282800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr3:23280200-23282200	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr3:23280200-23282200	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr3:23280200-23282600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr3:23280200-23282600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr3:23280200-23282800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr3:23280200-23291400	Weak transcription	Psoas Muscle	Psoas
16	chr3:23280400-23290600	Weak transcription	Primary B cells from peripheral blood	blood
17	chr3:23280800-23282200	Enhancers	Liver	Liver
18	chr3:23280800-23282600	Enhancers	Brain Hippocampus Middle	brain
19	chr3:23280800-23283600	Enhancers	Brain Anterior Caudate	brain
20	chr3:23280800-23285000	Enhancers	Brain Cingulate Gyrus	brain
21	chr3:23281000-23282200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr3:23281000-23282600	Enhancers	Brain Substantia Nigra	brain
23	chr3:23281200-23282200	Enhancers	Adipose Nuclei	Adipose
24	chr3:23281200-23282200	Enhancers	A549	lung
25	chr3:23281200-23282600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr3:23281400-23282400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr3:23281400-23282800	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr3:23281400-23298200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr3:23281600-23282600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr3:23282000-23282200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr3:23282000-23282200	Enhancers	Muscle Satellite Cultured Cells	--
32	chr3:23282000-23283200	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr3:23282000-23290200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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