Variant report

Variant	rs9881332
Chromosome Location	chr3:23241798-23241799
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr3:23241741-23241801	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:23229817..23231730-chr3:23239013..23241977,2	MCF-7	breast:
2	chr3:23240804..23242646-chr3:23244482..23246558,2	K562	blood:
3	chr3:23240263..23242304-chr3:23245058..23246936,2	K562	blood:
4	chr3:23240535..23243490-chr3:23256250..23257758,2	MCF-7	breast:

Variant related genes	Relation type
UBE2E2	TF binding region
ENSG00000182247	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1013460	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs1027379	0.88[JPT][hapmap]
rs1032499	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11129116	0.82[JPT][hapmap]
rs11714151	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11720461	0.86[JPT][hapmap]
rs11721203	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11916627	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12330479	0.84[JPT][hapmap]
rs12493361	0.91[JPT][hapmap]
rs12629848	0.91[JPT][hapmap]
rs13074192	0.86[JPT][hapmap]
rs13321359	0.80[JPT][hapmap]
rs13326048	0.91[JPT][hapmap]
rs1552930	0.86[JPT][hapmap]
rs17012812	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs17012869	0.91[JPT][hapmap]
rs2172828	0.91[JPT][hapmap]
rs2359759	0.95[JPT][hapmap]
rs28712166	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3922891	0.87[ASN][1000 genomes]
rs4282081	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4318574	0.84[ASN][1000 genomes]
rs4432667	0.87[ASN][1000 genomes]
rs4561853	0.84[AMR][1000 genomes]
rs4858062	0.91[JPT][hapmap]
rs4858482	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4858483	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs4858496	0.91[JPT][hapmap]
rs4858500	0.91[JPT][hapmap]
rs4858502	0.95[JPT][hapmap]
rs4858506	0.91[JPT][hapmap]
rs6550744	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6550746	0.93[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs6550748	0.95[JPT][hapmap]
rs6550755	0.86[JPT][hapmap]
rs6784195	0.91[JPT][hapmap]
rs6784771	0.85[JPT][hapmap]
rs6804123	0.95[JPT][hapmap]
rs6805889	0.82[JPT][hapmap]
rs7371852	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7374182	0.83[ASN][1000 genomes]
rs7617072	0.95[JPT][hapmap]
rs7631334	0.95[JPT][hapmap]
rs9310714	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9310715	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs9809176	0.90[JPT][hapmap]
rs9825778	0.90[JPT][hapmap]
rs9826877	0.89[JPT][hapmap]
rs9836787	0.86[JPT][hapmap]
rs9839738	0.86[JPT][hapmap]
rs9841123	0.86[JPT][hapmap]
rs9846398	0.90[JPT][hapmap]
rs9847027	0.91[JPT][hapmap]
rs9847958	0.90[JPT][hapmap]
rs9848077	0.91[JPT][hapmap]
rs9849176	0.88[JPT][hapmap]
rs9850944	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9854590	0.86[JPT][hapmap]
rs9859651	0.95[JPT][hapmap]
rs9864908	0.86[JPT][hapmap]
rs9874082	0.91[JPT][hapmap]
rs9875663	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999882	chr3:23121533-23257718	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23237600-23242800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:23237800-23243800	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr3:23237800-23244000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr3:23238000-23243800	Weak transcription	Aorta	Aorta
5	chr3:23240000-23242000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:23240800-23243600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:23241000-23243600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:23241000-23243600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr3:23241200-23243600	Weak transcription	Adipose Nuclei	Adipose
10	chr3:23241400-23242800	Weak transcription	Left Ventricle	heart
11	chr3:23241400-23243400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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