Variant report

Variant	rs7374182
Chromosome Location	chr3:23208565-23208566
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:23208542..23210812-chr3:23212932..23215034,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1013460	0.81[JPT][hapmap]
rs1032499	0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs11714151	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11721203	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11916627	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12493361	0.81[JPT][hapmap]
rs12629848	0.81[JPT][hapmap]
rs17012812	0.85[JPT][hapmap]
rs17012869	0.81[JPT][hapmap]
rs2172828	0.81[JPT][hapmap]
rs28712166	0.85[ASN][1000 genomes]
rs3922891	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4282081	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4318574	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4432667	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4561853	0.95[ASN][1000 genomes]
rs4858062	0.81[JPT][hapmap]
rs4858482	0.84[ASN][1000 genomes]
rs4858483	0.85[JPT][hapmap]
rs4858496	0.81[JPT][hapmap]
rs4858500	0.81[JPT][hapmap]
rs4858502	0.85[JPT][hapmap]
rs4858506	0.81[JPT][hapmap]
rs6550744	0.84[ASN][1000 genomes]
rs6550748	0.85[JPT][hapmap]
rs6804123	0.85[JPT][hapmap]
rs7371852	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7617072	0.84[JPT][hapmap]
rs7631334	0.85[JPT][hapmap]
rs9310714	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9310715	0.85[JPT][hapmap]
rs9809176	0.85[JPT][hapmap]
rs9825778	0.81[JPT][hapmap]
rs9826877	0.84[JPT][hapmap]
rs9846398	0.81[JPT][hapmap]
rs9847027	0.81[JPT][hapmap]
rs9847958	0.81[JPT][hapmap]
rs9848077	0.81[JPT][hapmap]
rs9849176	0.82[JPT][hapmap]
rs9850944	0.80[ASN][1000 genomes]
rs9874082	0.81[JPT][hapmap]
rs9875663	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9881332	0.90[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999882	chr3:23121533-23257718	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23205400-23209000	Weak transcription	GM12878-XiMat	blood
2	chr3:23207800-23209200	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links