Variant report
| Variant | rs28712166 |
|---|---|
| Chromosome Location | chr3:23226579-23226580 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1013460 | 0.81[ASN][1000 genomes] |
| rs1032499 | 0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11714151 | 0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11721203 | 0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11916627 | 0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs17012812 | 0.81[ASN][1000 genomes] |
| rs3922891 | 0.89[ASN][1000 genomes] |
| rs4282081 | 0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4318574 | 0.85[ASN][1000 genomes] |
| rs4432667 | 0.89[ASN][1000 genomes] |
| rs4561853 | 0.90[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs4858482 | 0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4858483 | 0.82[ASN][1000 genomes] |
| rs6550744 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6550746 | 0.80[ASN][1000 genomes] |
| rs7371852 | 0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7374182 | 0.85[ASN][1000 genomes] |
| rs9310714 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9310715 | 0.81[ASN][1000 genomes] |
| rs9850944 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9875663 | 1.00[ASN][1000 genomes] |
| rs9881332 | 0.84[EUR][1000 genomes];0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv999882 | chr3:23121533-23257718 | Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv834636 | chr3:23138653-23301443 | Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:23225400-23227000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
