Variant report

Variant	rs9875663
Chromosome Location	chr3:23231457-23231458
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:23229817..23231730-chr3:23239013..23241977,2	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1013460	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1027379	0.87[JPT][hapmap]
rs1032499	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11129116	0.81[JPT][hapmap]
rs11714151	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11720461	0.85[JPT][hapmap]
rs11721203	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11916627	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12330479	0.84[JPT][hapmap]
rs12493361	0.90[JPT][hapmap]
rs12629848	0.90[JPT][hapmap]
rs13074192	0.86[JPT][hapmap]
rs13326048	0.90[JPT][hapmap]
rs1552930	0.85[JPT][hapmap]
rs17012812	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs17012869	0.90[JPT][hapmap]
rs2172828	0.90[JPT][hapmap]
rs2359759	0.95[JPT][hapmap]
rs28712166	1.00[ASN][1000 genomes]
rs3922891	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4282081	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4318574	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4432667	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4561853	0.80[ASN][1000 genomes]
rs4858062	0.90[JPT][hapmap]
rs4858482	0.99[ASN][1000 genomes]
rs4858483	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs4858496	0.90[JPT][hapmap]
rs4858500	0.90[JPT][hapmap]
rs4858502	0.94[JPT][hapmap]
rs4858506	0.90[JPT][hapmap]
rs6550744	0.99[ASN][1000 genomes]
rs6550746	0.93[CHB][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs6550748	0.95[JPT][hapmap]
rs6550755	0.86[JPT][hapmap]
rs6784195	0.90[JPT][hapmap]
rs6784771	0.89[JPT][hapmap]
rs6804123	0.95[JPT][hapmap]
rs6805889	0.81[JPT][hapmap]
rs7371852	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7374182	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7617072	0.94[JPT][hapmap]
rs7631334	0.95[JPT][hapmap]
rs9310714	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9310715	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs9809176	0.89[JPT][hapmap]
rs9825778	0.90[JPT][hapmap]
rs9826877	0.89[JPT][hapmap]
rs9836787	0.86[JPT][hapmap]
rs9839738	0.85[JPT][hapmap]
rs9841123	0.86[JPT][hapmap]
rs9846398	0.90[JPT][hapmap]
rs9847027	0.90[JPT][hapmap]
rs9847958	0.90[JPT][hapmap]
rs9848077	0.90[JPT][hapmap]
rs9849176	0.88[JPT][hapmap]
rs9850944	0.95[ASN][1000 genomes]
rs9854590	0.85[JPT][hapmap]
rs9859651	0.95[JPT][hapmap]
rs9864908	0.86[JPT][hapmap]
rs9874082	0.90[JPT][hapmap]
rs9881332	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999882	chr3:23121533-23257718	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23231000-23235200	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr3:23231200-23237400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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