Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:23229817..23231730-chr3:23239013..23241977,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1032499	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11714151	0.87[EUR][1000 genomes]
rs11721203	0.87[EUR][1000 genomes]
rs11916627	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11917849	0.81[AFR][1000 genomes]
rs13325712	0.84[AFR][1000 genomes]
rs28712166	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3922891	0.85[ASN][1000 genomes]
rs4282081	0.87[EUR][1000 genomes]
rs4318574	0.81[ASN][1000 genomes]
rs4432667	0.85[ASN][1000 genomes]
rs4561853	0.87[EUR][1000 genomes]
rs4858482	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4858483	0.80[ASN][1000 genomes]
rs6550744	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7371852	0.87[EUR][1000 genomes]
rs7374182	0.80[ASN][1000 genomes]
rs9310714	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9812616	0.82[AFR][1000 genomes]
rs9875663	0.95[ASN][1000 genomes]
rs9881332	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999882	chr3:23121533-23257718	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23230200-23231000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:23230400-23231000	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr3:23230600-23231200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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