Variant report

Variant	rs11721203
Chromosome Location	chr3:23207031-23207032
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1013460	0.85[JPT][hapmap]
rs1027379	0.81[JPT][hapmap]
rs1032499	0.91[CEU][hapmap];0.89[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11714151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11720461	0.81[JPT][hapmap]
rs11916627	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12493361	0.85[JPT][hapmap]
rs12629848	0.85[JPT][hapmap]
rs13074192	0.81[JPT][hapmap]
rs1552930	0.80[JPT][hapmap]
rs17012812	0.85[JPT][hapmap]
rs17012869	0.85[JPT][hapmap]
rs2172828	0.85[JPT][hapmap]
rs28712166	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3922891	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4282081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4318574	0.94[ASN][1000 genomes]
rs4432667	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4478098	0.82[AMR][1000 genomes]
rs4561853	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4858062	0.85[JPT][hapmap]
rs4858482	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4858483	0.85[JPT][hapmap]
rs4858496	0.85[JPT][hapmap]
rs4858500	0.85[JPT][hapmap]
rs4858502	0.85[JPT][hapmap]
rs4858506	0.85[JPT][hapmap]
rs6550744	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6550746	0.83[JPT][hapmap]
rs6550748	0.85[JPT][hapmap]
rs6804123	0.85[JPT][hapmap]
rs7371852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7374182	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7617072	0.84[JPT][hapmap]
rs9310714	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9310715	0.85[JPT][hapmap]
rs9809176	0.89[JPT][hapmap]
rs9825778	0.84[JPT][hapmap]
rs9826877	0.83[JPT][hapmap]
rs9836787	0.81[JPT][hapmap]
rs9839738	0.80[JPT][hapmap]
rs9841123	0.81[JPT][hapmap]
rs9846398	0.81[JPT][hapmap]
rs9847027	0.85[JPT][hapmap]
rs9847958	0.81[JPT][hapmap]
rs9848077	0.85[JPT][hapmap]
rs9849176	0.87[JPT][hapmap]
rs9850944	0.87[EUR][1000 genomes]
rs9854590	0.80[JPT][hapmap]
rs9864908	0.81[JPT][hapmap]
rs9874082	0.85[JPT][hapmap]
rs9875663	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9881332	0.83[CEU][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999882	chr3:23121533-23257718	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11721203	NR1D2	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23205400-23209000	Weak transcription	GM12878-XiMat	blood
2	chr3:23206600-23208200	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr3:23206800-23207400	Weak transcription	Fetal Thymus	thymus

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