Variant report

Variant	rs9826877
Chromosome Location	chr3:23273235-23273236
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:23247004..23248744-chr3:23272999..23274643,2	K562	blood:

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs1013460	0.83[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1027379	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1032499	0.87[CHB][hapmap];0.89[JPT][hapmap]
rs11129113	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11129116	0.94[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11708117	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11708176	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11711072	0.84[YRI][hapmap]
rs11717397	0.83[ASN][1000 genomes]
rs11720461	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11920019	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12330262	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12330479	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12493361	0.94[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12496983	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12497974	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12629848	0.83[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12715048	0.83[YRI][hapmap]
rs13074192	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs13080261	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13080401	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13081371	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13087861	0.84[YRI][hapmap]
rs13321359	0.85[CHB][hapmap]
rs13325712	0.83[YRI][hapmap]
rs13326048	0.88[CHB][hapmap];0.95[JPT][hapmap]
rs1353322	0.87[YRI][hapmap]
rs1495131	0.94[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1552930	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1692617	0.87[CHB][hapmap];0.83[JPT][hapmap]
rs1692651	0.88[CHB][hapmap]
rs1695171	0.88[CHB][hapmap]
rs17012812	0.93[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17012869	0.94[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1973400	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2055154	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2172828	0.83[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2359759	0.87[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap]
rs2359763	0.88[CHB][hapmap]
rs3104243	0.87[CHB][hapmap]
rs34919006	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4241511	0.94[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4241512	0.81[ASN][1000 genomes]
rs4488778	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4858062	0.83[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4858064	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4858074	0.88[YRI][hapmap]
rs4858483	0.87[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4858484	0.94[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4858491	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4858492	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4858496	0.94[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4858497	0.93[CEU][hapmap];0.94[CHB][hapmap];0.94[EUR][1000 genomes]
rs4858500	0.94[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4858501	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4858502	0.93[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes]
rs4858504	0.80[YRI][hapmap];0.82[ASN][1000 genomes]
rs4858506	0.88[CHB][hapmap];0.94[JPT][hapmap]
rs59429714	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6550746	0.93[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6550748	0.93[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6550755	0.88[CHB][hapmap];0.95[JPT][hapmap]
rs6550756	0.87[CHB][hapmap];0.92[YRI][hapmap]
rs6769173	0.87[CHB][hapmap];0.96[YRI][hapmap]
rs6784195	0.88[CHB][hapmap];0.95[JPT][hapmap]
rs6784771	0.87[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6795492	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6795968	0.81[YRI][hapmap]
rs6796840	0.87[CHB][hapmap]
rs6804123	0.93[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap];0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6805889	0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs716457	0.87[CHB][hapmap]
rs7429470	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7617072	0.87[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7622784	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7631334	0.87[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap]
rs778459	0.88[CHB][hapmap]
rs778460	0.88[CHB][hapmap];0.92[YRI][hapmap]
rs778462	0.87[CHB][hapmap]
rs778468	0.88[CHB][hapmap];0.95[JPT][hapmap]
rs778470	0.88[CHB][hapmap]
rs778471	0.88[CHB][hapmap]
rs778486	0.87[CHB][hapmap]
rs778494	0.88[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap]
rs778506	0.87[CHB][hapmap]
rs778508	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs9310715	0.93[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9809176	0.94[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9816895	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9821101	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9822422	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9825778	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs9826647	0.88[CHB][hapmap]
rs9836787	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9839738	0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.82[ASN][1000 genomes]
rs9841123	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9841944	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9846398	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9847027	0.94[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9847958	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9848077	0.83[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9849176	0.94[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9853489	0.93[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9854148	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9854590	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9859651	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs9861803	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9864908	0.83[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9865602	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9873317	0.86[CHB][hapmap]
rs9874082	0.94[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9874822	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9881332	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23246400-23273400	Weak transcription	Aorta	Aorta
2	chr3:23249000-23273400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:23260800-23273400	Weak transcription	Right Atrium	heart
4	chr3:23261000-23273400	Weak transcription	Ovary	ovary
5	chr3:23261000-23274400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:23261400-23278200	Weak transcription	Brain Angular Gyrus	brain
7	chr3:23265400-23282000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:23266200-23277800	Weak transcription	Fetal Thymus	thymus
9	chr3:23267600-23274400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:23269400-23274200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr3:23270600-23274400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr3:23270600-23278200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr3:23270600-23278400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr3:23271200-23276800	Weak transcription	Psoas Muscle	Psoas
15	chr3:23271200-23278200	Weak transcription	Right Ventricle	heart
16	chr3:23272600-23283000	Weak transcription	HMEC	breast
17	chr3:23273000-23274800	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr3:23273000-23274800	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr3:23273200-23273400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
20	chr3:23273200-23273800	ZNF genes & repeats	Primary B cells from cord blood	blood
21	chr3:23273200-23273800	Enhancers	Brain Substantia Nigra	brain
22	chr3:23273200-23274000	Enhancers	Left Ventricle	heart
23	chr3:23273200-23274000	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr3:23273200-23274600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr3:23273200-23274800	Enhancers	HSMMtube	muscle

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