Variant report

Variant	rs9813902
Chromosome Location	chr3:177611750-177611751
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs9829232	0.98[EUR][1000 genomes]
rs9830478	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9852862	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9871923	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177581400-177622600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:177594400-177616200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:177608800-177612600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:177610800-177613000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr3:177610800-177613200	Enhancers	HUVEC	blood vessel
6	chr3:177611200-177611800	Enhancers	HSMM	muscle
7	chr3:177611200-177612000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:177611400-177612000	Weak transcription	Hela-S3	cervix
9	chr3:177611400-177613400	Weak transcription	Spleen	Spleen
10	chr3:177611600-177612000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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