Variant report

Variant	rs9829232
Chromosome Location	chr3:177616343-177616344
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs73047645	0.88[AFR][1000 genomes]
rs9813902	0.98[EUR][1000 genomes]
rs9830478	0.98[EUR][1000 genomes]
rs9871923	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177581400-177622600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:177616000-177618000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:177616000-177618000	ZNF genes & repeats	Pancreas	Pancrea
4	chr3:177616000-177618000	ZNF genes & repeats	Dnd41	blood
5	chr3:177616200-177617000	ZNF genes & repeats	Fetal Stomach	stomach
6	chr3:177616200-177618200	ZNF genes & repeats	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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