Variant report

Variant	rs9871923
Chromosome Location	chr3:177617071-177617072
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs9813902	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9829232	0.98[EUR][1000 genomes]
rs9830478	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9852862	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177581400-177622600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:177616000-177618000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:177616000-177618000	ZNF genes & repeats	Pancreas	Pancrea
4	chr3:177616000-177618000	ZNF genes & repeats	Dnd41	blood
5	chr3:177616200-177618200	ZNF genes & repeats	Liver	Liver
6	chr3:177616400-177618000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:177616400-177618000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:177616400-177618400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:177617000-177617800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr3:177617000-177621200	Weak transcription	Fetal Kidney	kidney

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links