Variant report

Variant	rs9830478
Chromosome Location	chr3:177611166-177611167
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs9813902	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9829232	0.98[EUR][1000 genomes]
rs9852862	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9871923	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177581400-177622600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:177594400-177616200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:177603000-177611200	Weak transcription	HSMM	muscle
4	chr3:177605600-177611200	Weak transcription	Psoas Muscle	Psoas
5	chr3:177608800-177611400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:177608800-177612600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:177610600-177611600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:177610800-177611400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr3:177610800-177611400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:177610800-177613000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr3:177610800-177613200	Enhancers	HUVEC	blood vessel
12	chr3:177611000-177611400	Enhancers	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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