Variant report

Variant	rs9830477
Chromosome Location	chr3:51019926-51019927
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs13314195	0.87[AFR][1000 genomes]
rs13314257	0.87[AFR][1000 genomes]
rs13320650	0.87[AFR][1000 genomes]
rs13325993	1.00[AFR][1000 genomes]
rs13326451	0.87[AFR][1000 genomes]
rs28368540	0.87[AFR][1000 genomes]
rs28396534	0.87[AFR][1000 genomes]
rs28464421	0.87[AFR][1000 genomes]
rs28558907	0.87[AFR][1000 genomes]
rs28620855	0.87[AFR][1000 genomes]
rs28650958	0.87[AFR][1000 genomes]
rs28651223	0.87[AFR][1000 genomes]
rs28672954	1.00[AFR][1000 genomes]
rs28683561	0.87[AFR][1000 genomes]
rs28739431	0.87[AFR][1000 genomes]
rs9311459	0.87[AFR][1000 genomes]
rs9808930	0.87[AFR][1000 genomes]
rs9810834	0.87[AFR][1000 genomes]
rs9811552	1.00[AFR][1000 genomes]
rs9813134	1.00[AFR][1000 genomes]
rs9814288	1.00[AFR][1000 genomes]
rs9817243	0.87[AFR][1000 genomes]
rs9817755	0.87[AFR][1000 genomes]
rs9818282	0.87[AFR][1000 genomes]
rs9820588	0.87[AFR][1000 genomes]
rs9820926	0.87[AFR][1000 genomes]
rs9821821	0.87[AFR][1000 genomes]
rs9823104	1.00[AFR][1000 genomes]
rs9831449	0.87[AFR][1000 genomes]
rs9835512	0.87[AFR][1000 genomes]
rs9841588	0.87[AFR][1000 genomes]
rs9843246	0.87[AFR][1000 genomes]
rs9844965	0.87[AFR][1000 genomes]
rs9845360	0.87[AFR][1000 genomes]
rs9846899	1.00[AFR][1000 genomes]
rs9846949	0.87[AFR][1000 genomes]
rs9847649	1.00[AFR][1000 genomes]
rs9849326	0.87[AFR][1000 genomes]
rs9851205	1.00[AFR][1000 genomes]
rs9854772	1.00[AFR][1000 genomes]
rs9860659	1.00[AFR][1000 genomes]
rs9863694	0.87[AFR][1000 genomes]
rs9869000	0.87[AFR][1000 genomes]
rs9870101	0.87[AFR][1000 genomes]
rs9872828	1.00[AFR][1000 genomes]
rs9873164	0.87[AFR][1000 genomes]
rs9875271	0.87[AFR][1000 genomes]
rs9876984	0.87[AFR][1000 genomes]
rs9878306	0.87[AFR][1000 genomes]
rs9878542	0.87[AFR][1000 genomes]
rs9879398	1.00[AFR][1000 genomes]
rs9989957	0.87[AFR][1000 genomes]
rs9989974	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1004881	chr3:50900793-51032918	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv536568	chr3:50900793-51032918	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51017000-51020800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:51019600-51023800	Weak transcription	Fetal Brain Female	brain
3	chr3:51019800-51021600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:51019800-51021600	Enhancers	Skeletal Muscle Female	skeletal muscle

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