Variant report

Variant	rs28739431
Chromosome Location	chr3:50857387-50857388
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs13314195	1.00[AFR][1000 genomes]
rs13314257	1.00[AFR][1000 genomes]
rs13318236	1.00[AFR][1000 genomes]
rs13320650	1.00[AFR][1000 genomes]
rs13325993	0.87[AFR][1000 genomes]
rs13326451	1.00[AFR][1000 genomes]
rs28368540	1.00[AFR][1000 genomes]
rs28396534	1.00[AFR][1000 genomes]
rs28464421	1.00[AFR][1000 genomes]
rs28470802	0.87[AFR][1000 genomes]
rs28558907	1.00[AFR][1000 genomes]
rs28620855	1.00[AFR][1000 genomes]
rs28650958	1.00[AFR][1000 genomes]
rs28651223	1.00[AFR][1000 genomes]
rs28672954	0.87[AFR][1000 genomes]
rs28683561	1.00[AFR][1000 genomes]
rs9311459	1.00[AFR][1000 genomes]
rs9808930	1.00[AFR][1000 genomes]
rs9810177	0.87[AFR][1000 genomes]
rs9810834	1.00[AFR][1000 genomes]
rs9811552	0.87[AFR][1000 genomes]
rs9813134	0.87[AFR][1000 genomes]
rs9814288	0.87[AFR][1000 genomes]
rs9817243	1.00[AFR][1000 genomes]
rs9817755	1.00[AFR][1000 genomes]
rs9817912	0.87[AFR][1000 genomes]
rs9818282	1.00[AFR][1000 genomes]
rs9820926	1.00[AFR][1000 genomes]
rs9821821	1.00[AFR][1000 genomes]
rs9823104	0.87[AFR][1000 genomes]
rs9826083	1.00[AFR][1000 genomes]
rs9826750	1.00[AFR][1000 genomes]
rs9830477	0.87[AFR][1000 genomes]
rs9831449	1.00[AFR][1000 genomes]
rs9832673	0.87[AFR][1000 genomes]
rs9835512	1.00[AFR][1000 genomes]
rs9841588	1.00[AFR][1000 genomes]
rs9843246	1.00[AFR][1000 genomes]
rs9843508	0.87[AFR][1000 genomes]
rs9844965	1.00[AFR][1000 genomes]
rs9845360	1.00[AFR][1000 genomes]
rs9846448	0.87[AFR][1000 genomes]
rs9846899	0.87[AFR][1000 genomes]
rs9846949	1.00[AFR][1000 genomes]
rs9847649	0.87[AFR][1000 genomes]
rs9849326	1.00[AFR][1000 genomes]
rs9849728	0.87[AFR][1000 genomes]
rs9851205	0.87[AFR][1000 genomes]
rs9854772	0.87[AFR][1000 genomes]
rs9856440	0.87[AFR][1000 genomes]
rs9860659	0.87[AFR][1000 genomes]
rs9861750	1.00[AFR][1000 genomes]
rs9863694	1.00[AFR][1000 genomes]
rs9869000	1.00[AFR][1000 genomes]
rs9869309	1.00[AFR][1000 genomes]
rs9870101	1.00[AFR][1000 genomes]
rs9870326	0.87[AFR][1000 genomes]
rs9872828	0.87[AFR][1000 genomes]
rs9873164	1.00[AFR][1000 genomes]
rs9875271	1.00[AFR][1000 genomes]
rs9876984	1.00[AFR][1000 genomes]
rs9878306	1.00[AFR][1000 genomes]
rs9878542	1.00[AFR][1000 genomes]
rs9879398	0.87[AFR][1000 genomes]
rs9879630	0.87[AFR][1000 genomes]
rs9989957	1.00[AFR][1000 genomes]
rs9989974	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50856000-50863200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:50856200-50863400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:50856400-50857400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr3:50857000-50857800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr3:50857000-50859200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:50857200-50862600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:50857200-50867600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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