Variant report

rSNPs within LD-proxies of this variant (count:45)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv10271	chr3:50890189-50913514	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1004881	chr3:50900793-51032918	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv536568	chr3:50900793-51032918	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv1821924	chr3:50902513-50912905	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	esv3389505	chr3:50909037-50912632	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50910000-50911400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr3:50910200-50911200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:50910200-50911400	Enhancers	Brain Substantia Nigra	brain
4	chr3:50910200-50911400	Enhancers	Left Ventricle	heart
5	chr3:50910200-50911600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr3:50910400-50911000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:50910400-50911400	Enhancers	H9 Cell Line	embryonic stem cell
8	chr3:50910400-50911400	Enhancers	Right Ventricle	heart
9	chr3:50910600-50911200	Enhancers	Brain Hippocampus Middle	brain
10	chr3:50910600-50911400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:50910600-50911600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr3:50910600-50912800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr3:50910800-50911000	Enhancers	Esophagus	oesophagus
14	chr3:50910800-50911200	Enhancers	Brain Anterior Caudate	brain
15	chr3:50910800-50911200	Enhancers	Brain Cingulate Gyrus	brain
16	chr3:50910800-50911400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr3:50910800-50911400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr3:50910800-50911400	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr3:50910800-50911400	Flanking Active TSS	GM12878-XiMat	blood
20	chr3:50910800-50911600	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr3:50910800-50911600	Enhancers	HUES64 Cell Line	embryonic stem cell

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