Variant report

Variant	rs9810834
Chromosome Location	chr3:51065061-51065062
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs13314195	1.00[AFR][1000 genomes]
rs13314257	1.00[AFR][1000 genomes]
rs13320650	1.00[AFR][1000 genomes]
rs13326451	1.00[AFR][1000 genomes]
rs28368540	1.00[AFR][1000 genomes]
rs28396534	1.00[AFR][1000 genomes]
rs28464421	1.00[AFR][1000 genomes]
rs28470802	0.87[AFR][1000 genomes]
rs28620855	1.00[AFR][1000 genomes]
rs28650958	1.00[AFR][1000 genomes]
rs28651223	1.00[AFR][1000 genomes]
rs28683561	1.00[AFR][1000 genomes]
rs28739431	1.00[AFR][1000 genomes]
rs9311459	1.00[AFR][1000 genomes]
rs9808930	1.00[AFR][1000 genomes]
rs9810177	0.87[AFR][1000 genomes]
rs9811552	0.87[AFR][1000 genomes]
rs9813134	0.87[AFR][1000 genomes]
rs9817243	1.00[AFR][1000 genomes]
rs9817755	1.00[AFR][1000 genomes]
rs9818282	1.00[AFR][1000 genomes]
rs9820926	1.00[AFR][1000 genomes]
rs9821821	1.00[AFR][1000 genomes]
rs9823104	0.87[AFR][1000 genomes]
rs9830477	0.87[AFR][1000 genomes]
rs9831449	1.00[AFR][1000 genomes]
rs9841588	1.00[AFR][1000 genomes]
rs9843246	1.00[AFR][1000 genomes]
rs9844965	1.00[AFR][1000 genomes]
rs9845360	1.00[AFR][1000 genomes]
rs9846448	0.87[AFR][1000 genomes]
rs9846949	1.00[AFR][1000 genomes]
rs9849326	1.00[AFR][1000 genomes]
rs9849728	0.87[AFR][1000 genomes]
rs9851205	0.87[AFR][1000 genomes]
rs9860659	0.87[AFR][1000 genomes]
rs9863694	1.00[AFR][1000 genomes]
rs9869000	1.00[AFR][1000 genomes]
rs9870101	1.00[AFR][1000 genomes]
rs9875271	1.00[AFR][1000 genomes]
rs9876984	1.00[AFR][1000 genomes]
rs9878306	1.00[AFR][1000 genomes]
rs9878542	1.00[AFR][1000 genomes]
rs9879398	0.87[AFR][1000 genomes]
rs9989957	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51062600-51065200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr3:51062800-51065200	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr3:51062800-51065400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr3:51062800-51065600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr3:51063200-51065400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:51063200-51065600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr3:51063200-51066800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:51063400-51065600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr3:51063600-51065200	Enhancers	Primary T helper naive cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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