Variant report

Variant	rs9846448
Chromosome Location	chr3:50864319-50864320
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs13314195	0.87[AFR][1000 genomes]
rs13314257	0.87[AFR][1000 genomes]
rs13318236	0.87[AFR][1000 genomes]
rs13320650	0.87[AFR][1000 genomes]
rs13326451	0.87[AFR][1000 genomes]
rs28368540	0.87[AFR][1000 genomes]
rs28396534	0.87[AFR][1000 genomes]
rs28464421	0.87[AFR][1000 genomes]
rs28470802	1.00[AFR][1000 genomes]
rs28558907	0.87[AFR][1000 genomes]
rs28620855	0.87[AFR][1000 genomes]
rs28650958	0.87[AFR][1000 genomes]
rs28651223	0.87[AFR][1000 genomes]
rs28683561	0.87[AFR][1000 genomes]
rs28739431	0.87[AFR][1000 genomes]
rs9311459	0.87[AFR][1000 genomes]
rs9808930	0.87[AFR][1000 genomes]
rs9810177	1.00[AFR][1000 genomes]
rs9810834	0.87[AFR][1000 genomes]
rs9817243	0.87[AFR][1000 genomes]
rs9817755	0.87[AFR][1000 genomes]
rs9817912	1.00[AFR][1000 genomes]
rs9818282	0.87[AFR][1000 genomes]
rs9820926	0.87[AFR][1000 genomes]
rs9821821	0.87[AFR][1000 genomes]
rs9826083	0.87[AFR][1000 genomes]
rs9826750	0.87[AFR][1000 genomes]
rs9831449	0.87[AFR][1000 genomes]
rs9835512	0.87[AFR][1000 genomes]
rs9841588	0.87[AFR][1000 genomes]
rs9843246	0.87[AFR][1000 genomes]
rs9844965	0.87[AFR][1000 genomes]
rs9845360	0.87[AFR][1000 genomes]
rs9846949	0.87[AFR][1000 genomes]
rs9849326	0.87[AFR][1000 genomes]
rs9849728	1.00[AFR][1000 genomes]
rs9861750	0.87[AFR][1000 genomes]
rs9863694	0.87[AFR][1000 genomes]
rs9869000	0.87[AFR][1000 genomes]
rs9869309	0.87[AFR][1000 genomes]
rs9870101	0.87[AFR][1000 genomes]
rs9873164	0.87[AFR][1000 genomes]
rs9875271	0.87[AFR][1000 genomes]
rs9876984	0.87[AFR][1000 genomes]
rs9878306	0.87[AFR][1000 genomes]
rs9878542	0.87[AFR][1000 genomes]
rs9989957	0.87[AFR][1000 genomes]
rs9989974	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50857200-50867600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr3:50860400-50868000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:50863600-50865200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:50863600-50867600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr3:50863800-50866800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:50864000-50867000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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