Variant report

Variant	rs9834135
Chromosome Location	chr3:89180052-89180053
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11128070	0.87[ASN][1000 genomes]
rs12494816	0.85[ASN][1000 genomes]
rs13077331	0.89[ASN][1000 genomes]
rs6551398	0.89[ASN][1000 genomes]
rs6551406	0.83[ASN][1000 genomes]
rs6767230	0.86[ASN][1000 genomes]
rs6779710	0.85[ASN][1000 genomes]
rs6790662	0.85[ASN][1000 genomes]
rs6793981	0.87[ASN][1000 genomes]
rs6800287	0.87[ASN][1000 genomes]
rs6804377	0.81[ASN][1000 genomes]
rs6807840	0.87[ASN][1000 genomes]
rs7373480	0.87[ASN][1000 genomes]
rs7426466	0.87[ASN][1000 genomes]
rs7426527	0.83[ASN][1000 genomes]
rs7427935	0.85[ASN][1000 genomes]
rs7622368	0.85[ASN][1000 genomes]
rs7632543	0.88[ASN][1000 genomes]
rs9810701	0.88[ASN][1000 genomes]
rs9811026	0.88[ASN][1000 genomes]
rs9814718	0.89[ASN][1000 genomes]
rs9815137	0.87[ASN][1000 genomes]
rs9828822	0.89[ASN][1000 genomes]
rs9835264	0.84[ASN][1000 genomes]
rs9859735	0.89[ASN][1000 genomes]
rs9860030	0.84[ASN][1000 genomes]
rs9861649	0.87[ASN][1000 genomes]
rs9868041	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877159	chr3:89018866-89207222	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv998460	chr3:89064073-89188335	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv536638	chr3:89064073-89188335	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv834760	chr3:89085529-89299398	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1005603	chr3:89174152-89223459	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89172000-89180800	Weak transcription	Brain Germinal Matrix	brain
2	chr3:89174000-89193200	Weak transcription	Fetal Brain Female	brain
3	chr3:89176800-89184800	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:89177600-89187200	Weak transcription	Fetal Lung	lung
5	chr3:89178400-89180600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:89178600-89182200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:89179400-89181000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:89179400-89182800	Weak transcription	Fetal Stomach	stomach
9	chr3:89179600-89188000	Weak transcription	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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