Variant report

Variant	rs9835264
Chromosome Location	chr3:89153658-89153659
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr3:89153388-89153795	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
EPHA3	TF binding region

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11128070	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12494816	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13077331	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13434229	0.91[EUR][1000 genomes]
rs56895676	0.93[EUR][1000 genomes]
rs57618914	0.93[EUR][1000 genomes]
rs58716947	0.91[EUR][1000 genomes]
rs58987133	0.93[EUR][1000 genomes]
rs59083916	0.91[EUR][1000 genomes]
rs59111523	0.93[EUR][1000 genomes]
rs59800917	0.93[EUR][1000 genomes]
rs60573712	0.91[EUR][1000 genomes]
rs61000929	0.91[EUR][1000 genomes]
rs61253060	0.93[EUR][1000 genomes]
rs6551398	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6551406	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6767230	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6779710	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6790662	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67935343	0.83[EUR][1000 genomes]
rs6793981	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6800287	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6804377	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6807840	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7373480	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73845930	0.93[EUR][1000 genomes]
rs73845931	0.93[EUR][1000 genomes]
rs73845942	0.91[EUR][1000 genomes]
rs73845947	0.93[EUR][1000 genomes]
rs73845948	0.93[EUR][1000 genomes]
rs7426466	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7426527	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7427935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7622368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7632543	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7651124	0.89[EUR][1000 genomes]
rs9310108	0.83[AMR][1000 genomes]
rs9810701	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9811026	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9814718	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9815137	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9828822	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9834135	0.84[ASN][1000 genomes]
rs9859735	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9860030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9861649	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9868041	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9883722	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877159	chr3:89018866-89207222	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv998460	chr3:89064073-89188335	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv536638	chr3:89064073-89188335	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv834760	chr3:89085529-89299398	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89148200-89154600	Weak transcription	Fetal Brain Male	brain
2	chr3:89152800-89156600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:89153000-89156400	Weak transcription	Left Ventricle	heart
4	chr3:89153200-89154200	Active TSS	Stomach Smooth Muscle	stomach
5	chr3:89153400-89154000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:89153400-89154000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr3:89153600-89154000	Enhancers	Fetal Muscle Leg	muscle
8	chr3:89153600-89154000	Active TSS	Right Atrium	heart
9	chr3:89153600-89154000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr3:89153600-89154200	Flanking Active TSS	Osteobl	bone

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