Variant report

Variant	rs13434229
Chromosome Location	chr3:89075803-89075804
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs12494816	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs13077331	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs56705347	0.94[AMR][1000 genomes]
rs56895676	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57618914	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58716947	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58987133	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59083916	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59111523	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59800917	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60573712	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61000929	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61253060	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6551398	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs6551406	0.84[EUR][1000 genomes]
rs6767230	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs6779710	1.00[CEU][hapmap]
rs6790662	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs67935343	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6793981	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs6800287	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs6804377	1.00[CEU][hapmap]
rs6807840	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7373480	0.82[EUR][1000 genomes]
rs73845930	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73845931	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73845942	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73845947	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73845948	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7426466	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7426527	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7427745	1.00[CEU][hapmap]
rs7427935	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7622368	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7632543	0.88[EUR][1000 genomes]
rs7651124	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs9810701	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9811026	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9814718	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9815137	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs9828822	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9835264	0.91[EUR][1000 genomes]
rs9859735	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9860030	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9861649	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs9868041	1.00[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834759	chr3:88901229-89105366	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv877158	chr3:89018866-89103302	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv877159	chr3:89018866-89207222	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv877160	chr3:89051475-89135125	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv998460	chr3:89064073-89188335	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv536638	chr3:89064073-89188335	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv822174	chr3:89066876-89076114	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv520982	chr3:89072526-89076055	Flanking Active TSS Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89075400-89076000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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