Variant report

Variant	rs7426527
Chromosome Location	chr3:89160571-89160572
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11128070	0.94[ASN][1000 genomes]
rs12494816	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13077331	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13434229	0.93[EUR][1000 genomes]
rs56895676	0.91[EUR][1000 genomes]
rs57618914	0.91[EUR][1000 genomes]
rs58716947	0.88[EUR][1000 genomes]
rs58987133	0.91[EUR][1000 genomes]
rs59083916	0.93[EUR][1000 genomes]
rs59111523	0.91[EUR][1000 genomes]
rs59800917	0.91[EUR][1000 genomes]
rs60573712	0.93[EUR][1000 genomes]
rs61000929	0.93[EUR][1000 genomes]
rs61253060	0.91[EUR][1000 genomes]
rs6551395	0.86[JPT][hapmap]
rs6551398	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6551406	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6767230	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6779710	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6790662	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67935343	0.81[EUR][1000 genomes]
rs6793981	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6797343	0.87[JPT][hapmap]
rs6800287	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6804377	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6807840	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7373480	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73845930	0.91[EUR][1000 genomes]
rs73845931	0.91[EUR][1000 genomes]
rs73845942	0.88[EUR][1000 genomes]
rs73845947	0.91[EUR][1000 genomes]
rs73845948	0.91[EUR][1000 genomes]
rs7426466	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7427745	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7427935	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7622368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7632543	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7633559	0.87[JPT][hapmap]
rs7651124	1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[EUR][1000 genomes]
rs9310113	0.86[JPT][hapmap]
rs9810701	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9811026	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9814718	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9815137	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9828822	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9834135	0.83[ASN][1000 genomes]
rs9835264	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9859735	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9860030	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9861649	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9868041	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877159	chr3:89018866-89207222	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv998460	chr3:89064073-89188335	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv536638	chr3:89064073-89188335	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv834760	chr3:89085529-89299398	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89157600-89163000	Active TSS	Fetal Brain Female	brain
2	chr3:89157600-89163200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:89157600-89163200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:89157600-89163200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr3:89157600-89163400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:89157600-89163600	Weak transcription	Spleen	Spleen
7	chr3:89157800-89163000	Weak transcription	Brain Hippocampus Middle	brain
8	chr3:89158000-89163200	Weak transcription	Fetal Heart	heart
9	chr3:89158200-89162400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:89158200-89163000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:89159200-89162800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr3:89159600-89160800	Enhancers	Fetal Brain Male	brain
13	chr3:89159800-89163000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr3:89160000-89162200	Weak transcription	Brain Germinal Matrix	brain
15	chr3:89160200-89160800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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