Variant report

Variant	rs7373480
Chromosome Location	chr3:89232841-89232842
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11128070	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12494816	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13077331	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13434229	0.82[EUR][1000 genomes]
rs56895676	0.84[EUR][1000 genomes]
rs57618914	0.84[EUR][1000 genomes]
rs58716947	0.82[EUR][1000 genomes]
rs58987133	0.84[EUR][1000 genomes]
rs59083916	0.82[EUR][1000 genomes]
rs59111523	0.84[EUR][1000 genomes]
rs59800917	0.84[EUR][1000 genomes]
rs60573712	0.82[EUR][1000 genomes]
rs61000929	0.82[EUR][1000 genomes]
rs61253060	0.84[EUR][1000 genomes]
rs6551398	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6551406	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6767230	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6779710	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6790662	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6793981	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6800287	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6804377	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6807840	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73845930	0.84[EUR][1000 genomes]
rs73845931	0.84[EUR][1000 genomes]
rs73845942	0.82[EUR][1000 genomes]
rs73845947	0.84[EUR][1000 genomes]
rs73845948	0.84[EUR][1000 genomes]
rs7426466	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7426527	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7427935	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7622368	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7632543	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7651124	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9810701	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9811026	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9814718	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9815137	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9828822	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9834135	0.87[ASN][1000 genomes]
rs9835264	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9859735	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9860030	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9861649	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9868041	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834760	chr3:89085529-89299398	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv997874	chr3:89188275-89279573	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1008916	chr3:89206065-89241915	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89221600-89233400	Weak transcription	Gastric	stomach
2	chr3:89222600-89233600	Weak transcription	Brain Germinal Matrix	brain
3	chr3:89227200-89235800	Weak transcription	Fetal Brain Female	brain
4	chr3:89229400-89233800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr3:89229400-89234800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr3:89229800-89233400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:89229800-89233800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:89229800-89233800	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:89230000-89233200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr3:89230000-89233400	Weak transcription	Fetal Lung	lung
11	chr3:89230000-89234000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:89230200-89233400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:89230200-89233600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr3:89230800-89233200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:89231200-89233200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr3:89231200-89233200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr3:89231400-89234600	Weak transcription	Fetal Brain Male	brain
18	chr3:89232400-89234000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr3:89232600-89233000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr3:89232600-89235000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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