Variant report

Variant	rs7651124
Chromosome Location	chr3:89204596-89204597
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11128070	0.81[ASN][1000 genomes]
rs12494816	1.00[CEU][hapmap];0.87[CHB][hapmap];0.86[EUR][1000 genomes]
rs13077331	1.00[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13434229	0.80[EUR][1000 genomes]
rs56895676	0.82[EUR][1000 genomes]
rs57618914	0.82[EUR][1000 genomes]
rs58716947	0.80[EUR][1000 genomes]
rs58987133	0.82[EUR][1000 genomes]
rs59083916	0.80[EUR][1000 genomes]
rs59111523	0.82[EUR][1000 genomes]
rs59800917	0.82[EUR][1000 genomes]
rs60573712	0.80[EUR][1000 genomes]
rs61000929	0.80[EUR][1000 genomes]
rs61253060	0.82[EUR][1000 genomes]
rs6551398	1.00[CEU][hapmap];0.88[CHB][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6551406	0.86[EUR][1000 genomes]
rs6767230	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes]
rs6779710	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.93[EUR][1000 genomes]
rs6790662	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs6793981	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6800287	1.00[CEU][hapmap];0.88[CHB][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6804377	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.93[EUR][1000 genomes]
rs6807840	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7373480	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73845930	0.82[EUR][1000 genomes]
rs73845931	0.82[EUR][1000 genomes]
rs73845942	0.80[EUR][1000 genomes]
rs73845947	0.82[EUR][1000 genomes]
rs73845948	0.82[EUR][1000 genomes]
rs7426466	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7426527	1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[EUR][1000 genomes]
rs7427745	1.00[CEU][hapmap];0.87[CHB][hapmap];0.81[JPT][hapmap]
rs7427935	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs7622368	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[EUR][1000 genomes]
rs7632543	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9810701	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9811026	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9814718	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9815137	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9828822	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9835264	0.89[EUR][1000 genomes]
rs9859735	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9860030	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[EUR][1000 genomes]
rs9861649	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9868041	1.00[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877159	chr3:89018866-89207222	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv834760	chr3:89085529-89299398	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1005603	chr3:89174152-89223459	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv997874	chr3:89188275-89279573	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3388277	chr3:89202462-89205460	Enhancers Active TSS Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89193600-89205800	Weak transcription	Fetal Brain Female	brain
2	chr3:89204000-89205000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:89204200-89204800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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