Variant report

Variant	rs60573712
Chromosome Location	chr3:89072347-89072348
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs12494816	0.84[EUR][1000 genomes]
rs13077331	0.86[EUR][1000 genomes]
rs13434229	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56895676	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57077378	0.85[AFR][1000 genomes]
rs57618914	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58716947	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58987133	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59083916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59111523	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59800917	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61000929	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61253060	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6551398	0.88[EUR][1000 genomes]
rs6551406	0.84[EUR][1000 genomes]
rs6767230	0.84[EUR][1000 genomes]
rs6790662	0.84[EUR][1000 genomes]
rs67935343	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6793981	0.86[EUR][1000 genomes]
rs6800287	0.88[EUR][1000 genomes]
rs6807840	0.86[EUR][1000 genomes]
rs7373480	0.82[EUR][1000 genomes]
rs73845930	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73845931	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73845942	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73845947	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73845948	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7426466	0.84[EUR][1000 genomes]
rs7426527	0.93[EUR][1000 genomes]
rs7427935	0.91[EUR][1000 genomes]
rs7622368	0.91[EUR][1000 genomes]
rs7632543	0.88[EUR][1000 genomes]
rs7651124	0.80[EUR][1000 genomes]
rs9810701	0.88[EUR][1000 genomes]
rs9811026	0.88[EUR][1000 genomes]
rs9814718	0.88[EUR][1000 genomes]
rs9815137	0.86[EUR][1000 genomes]
rs9828822	0.88[EUR][1000 genomes]
rs9835264	0.91[EUR][1000 genomes]
rs9859735	0.88[EUR][1000 genomes]
rs9860030	0.91[EUR][1000 genomes]
rs9861649	0.86[EUR][1000 genomes]
rs9868041	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834759	chr3:88901229-89105366	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv877158	chr3:89018866-89103302	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv877159	chr3:89018866-89207222	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv877160	chr3:89051475-89135125	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv998460	chr3:89064073-89188335	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv536638	chr3:89064073-89188335	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv822174	chr3:89066876-89076114	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89069000-89074400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:89071200-89073800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:89071200-89073800	Weak transcription	NH-A	brain
4	chr3:89071800-89073200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr3:89071800-89073800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:89071800-89073800	Weak transcription	NHDF-Ad	bronchial
7	chr3:89071800-89074000	Weak transcription	Osteobl	bone
8	chr3:89071800-89074200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:89071800-89074200	Weak transcription	HMEC	breast
10	chr3:89072000-89073600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:89072000-89073800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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