Variant report

Variant	rs58987133
Chromosome Location	chr3:89091273-89091274
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs12494816	0.86[EUR][1000 genomes]
rs13077331	0.89[EUR][1000 genomes]
rs13434229	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56705347	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56895676	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57618914	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58716947	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59083916	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59111523	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59800917	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60573712	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60574043	0.88[ASN][1000 genomes]
rs61000929	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61253060	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6551398	0.91[EUR][1000 genomes]
rs6551406	0.86[EUR][1000 genomes]
rs6767230	0.86[EUR][1000 genomes]
rs6790662	0.86[EUR][1000 genomes]
rs67935343	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6793981	0.89[EUR][1000 genomes]
rs6800287	0.91[EUR][1000 genomes]
rs6807840	0.89[EUR][1000 genomes]
rs7373480	0.84[EUR][1000 genomes]
rs73845930	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73845931	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73845942	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73845947	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73845948	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7426466	0.86[EUR][1000 genomes]
rs7426527	0.91[EUR][1000 genomes]
rs7427935	0.93[EUR][1000 genomes]
rs7622368	0.93[EUR][1000 genomes]
rs7632543	0.91[EUR][1000 genomes]
rs7651124	0.82[EUR][1000 genomes]
rs9810701	0.91[EUR][1000 genomes]
rs9811026	0.91[EUR][1000 genomes]
rs9814718	0.91[EUR][1000 genomes]
rs9815137	0.89[EUR][1000 genomes]
rs9828822	0.91[EUR][1000 genomes]
rs9835264	0.93[EUR][1000 genomes]
rs9859735	0.91[EUR][1000 genomes]
rs9860030	0.93[EUR][1000 genomes]
rs9861649	0.89[EUR][1000 genomes]
rs9868041	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834759	chr3:88901229-89105366	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv877158	chr3:89018866-89103302	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv877159	chr3:89018866-89207222	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv877160	chr3:89051475-89135125	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv998460	chr3:89064073-89188335	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv536638	chr3:89064073-89188335	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv834760	chr3:89085529-89299398	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89090800-89092000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr3:89091200-89091400	Enhancers	Fetal Brain Female	brain
3	chr3:89091200-89091600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:89091200-89091600	Enhancers	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links