Variant report

Variant	rs57618914
Chromosome Location	chr3:89092561-89092562
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs12494816	0.86[EUR][1000 genomes]
rs13077331	0.89[EUR][1000 genomes]
rs13434229	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56705347	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56895676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58716947	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58987133	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59083916	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59111523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59800917	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60573712	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60574043	0.88[ASN][1000 genomes]
rs61000929	0.93[EUR][1000 genomes]
rs61253060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6551398	0.91[EUR][1000 genomes]
rs6551406	0.86[EUR][1000 genomes]
rs6767230	0.86[EUR][1000 genomes]
rs6790662	0.86[EUR][1000 genomes]
rs67935343	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6793981	0.89[EUR][1000 genomes]
rs6800287	0.91[EUR][1000 genomes]
rs6807840	0.89[EUR][1000 genomes]
rs7373480	0.84[EUR][1000 genomes]
rs73845930	0.95[EUR][1000 genomes]
rs73845931	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73845942	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73845947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73845948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7426466	0.86[EUR][1000 genomes]
rs7426527	0.91[EUR][1000 genomes]
rs7427935	0.93[EUR][1000 genomes]
rs7622368	0.93[EUR][1000 genomes]
rs7632543	0.91[EUR][1000 genomes]
rs7651124	0.82[EUR][1000 genomes]
rs9810701	0.91[EUR][1000 genomes]
rs9811026	0.91[EUR][1000 genomes]
rs9814718	0.91[EUR][1000 genomes]
rs9815137	0.89[EUR][1000 genomes]
rs9828822	0.91[EUR][1000 genomes]
rs9835264	0.93[EUR][1000 genomes]
rs9859735	0.91[EUR][1000 genomes]
rs9860030	0.93[EUR][1000 genomes]
rs9861649	0.89[EUR][1000 genomes]
rs9868041	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834759	chr3:88901229-89105366	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv877158	chr3:89018866-89103302	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv877159	chr3:89018866-89207222	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv877160	chr3:89051475-89135125	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv998460	chr3:89064073-89188335	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv536638	chr3:89064073-89188335	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv834760	chr3:89085529-89299398	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89091600-89092600	Weak transcription	Fetal Brain Male	brain
2	chr3:89091600-89092600	Weak transcription	Fetal Brain Female	brain
3	chr3:89091600-89092800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr3:89091600-89093000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:89091600-89093800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:89092400-89093000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:89092400-89093000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links