Variant report

Variant	rs6551395
Chromosome Location	chr3:89182432-89182433
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1040016	0.86[CEU][hapmap]
rs11916046	0.84[CEU][hapmap]
rs11916939	0.85[CEU][hapmap]
rs11918311	0.96[YRI][hapmap]
rs11919574	0.90[YRI][hapmap]
rs11920519	0.90[CEU][hapmap];0.83[CHB][hapmap]
rs11921042	0.96[YRI][hapmap]
rs11929346	0.82[CEU][hapmap]
rs12486049	0.96[YRI][hapmap]
rs12486971	0.82[CEU][hapmap]
rs12494816	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs12496485	0.82[CEU][hapmap]
rs13058886	0.91[YRI][hapmap]
rs13075931	0.95[YRI][hapmap]
rs13077331	0.91[JPT][hapmap]
rs13093815	0.87[YRI][hapmap]
rs13097212	0.91[YRI][hapmap]
rs13097548	0.92[YRI][hapmap]
rs13097740	0.85[CEU][hapmap]
rs13100590	0.86[CEU][hapmap]
rs13101118	0.96[YRI][hapmap]
rs1996068	0.86[CEU][hapmap];0.84[CHB][hapmap]
rs1996069	0.82[CEU][hapmap]
rs3946805	0.85[CEU][hapmap]
rs4132274	0.95[YRI][hapmap]
rs6551397	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6551398	0.89[JPT][hapmap]
rs6767230	0.92[JPT][hapmap]
rs6777119	0.86[CEU][hapmap]
rs6779710	0.92[JPT][hapmap]
rs6790662	0.90[JPT][hapmap]
rs6791217	0.91[CEU][hapmap];0.84[CHB][hapmap]
rs6793981	0.92[JPT][hapmap]
rs6794198	0.89[CEU][hapmap];0.82[CHB][hapmap]
rs6794682	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6797343	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6800287	0.83[JPT][hapmap]
rs6804377	0.92[JPT][hapmap]
rs6807840	0.92[JPT][hapmap]
rs7426466	0.92[JPT][hapmap]
rs7426527	0.86[JPT][hapmap]
rs7427745	0.90[JPT][hapmap]
rs7430987	0.96[YRI][hapmap]
rs7432443	0.96[YRI][hapmap]
rs7433634	0.85[EUR][1000 genomes]
rs7617920	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7622368	0.83[JPT][hapmap]
rs7629132	0.90[CEU][hapmap];0.83[CHB][hapmap]
rs7631304	0.82[CEU][hapmap]
rs7631932	0.85[YRI][hapmap]
rs7633559	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7635321	0.85[YRI][hapmap]
rs907713	0.80[CEU][hapmap]
rs9310113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9310115	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9310116	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9810701	0.92[JPT][hapmap]
rs9811026	0.92[JPT][hapmap]
rs9814718	0.92[JPT][hapmap]
rs9815137	0.92[JPT][hapmap]
rs9828822	0.92[JPT][hapmap]
rs9851635	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9859735	0.92[JPT][hapmap]
rs9860030	0.83[JPT][hapmap]
rs9861649	0.92[JPT][hapmap]
rs9866327	0.85[CEU][hapmap];0.90[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9868041	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877159	chr3:89018866-89207222	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv998460	chr3:89064073-89188335	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv536638	chr3:89064073-89188335	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv834760	chr3:89085529-89299398	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1005603	chr3:89174152-89223459	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89174000-89193200	Weak transcription	Fetal Brain Female	brain
2	chr3:89176800-89184800	Weak transcription	Fetal Muscle Leg	muscle
3	chr3:89177600-89187200	Weak transcription	Fetal Lung	lung
4	chr3:89179400-89182800	Weak transcription	Fetal Stomach	stomach
5	chr3:89179600-89188000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr3:89180400-89182800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:89180800-89183400	Strong transcription	Brain Germinal Matrix	brain
8	chr3:89181800-89182600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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