Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1040016	0.80[EUR][1000 genomes]
rs11916046	0.80[EUR][1000 genomes]
rs11916939	0.80[EUR][1000 genomes]
rs11920519	0.82[EUR][1000 genomes]
rs13060907	0.82[EUR][1000 genomes]
rs13097740	0.80[EUR][1000 genomes]
rs13100590	0.80[EUR][1000 genomes]
rs17026797	0.84[EUR][1000 genomes]
rs17026821	0.80[EUR][1000 genomes]
rs1996068	0.80[EUR][1000 genomes]
rs2346324	0.80[EUR][1000 genomes]
rs2346325	0.81[EUR][1000 genomes]
rs34046877	0.82[EUR][1000 genomes]
rs35532963	0.80[EUR][1000 genomes]
rs36076607	0.80[EUR][1000 genomes]
rs3946805	0.80[EUR][1000 genomes]
rs60475411	0.82[EUR][1000 genomes]
rs6551395	0.85[EUR][1000 genomes]
rs6551397	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6777119	0.80[EUR][1000 genomes]
rs6791217	0.82[EUR][1000 genomes]
rs6794198	0.82[EUR][1000 genomes]
rs6794682	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6797343	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71322864	0.82[EUR][1000 genomes]
rs71322865	0.80[EUR][1000 genomes]
rs7617920	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7629132	0.82[EUR][1000 genomes]
rs7633559	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9310113	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9310115	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9310116	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9866327	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834760	chr3:89085529-89299398	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv997874	chr3:89188275-89279573	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv437866	chr3:89247881-89480265	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89250200-89263200	Weak transcription	Fetal Brain Female	brain
2	chr3:89250400-89261800	Weak transcription	Fetal Brain Male	brain

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