Variant report

Variant	rs9866327
Chromosome Location	chr3:89223035-89223036
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11916046	0.83[CEU][hapmap]
rs11919574	0.93[YRI][hapmap]
rs12486049	0.83[YRI][hapmap]
rs13075931	0.87[YRI][hapmap]
rs13101118	0.83[YRI][hapmap]
rs4132274	0.87[YRI][hapmap]
rs6551395	0.85[CEU][hapmap];0.90[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6551397	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6791217	0.81[CEU][hapmap]
rs6794682	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6797343	0.85[CEU][hapmap];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7433634	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7617920	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7633559	0.85[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310113	0.85[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310115	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9310116	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9851635	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834760	chr3:89085529-89299398	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1005603	chr3:89174152-89223459	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv997874	chr3:89188275-89279573	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1008916	chr3:89206065-89241915	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89217000-89223400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:89220400-89223600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:89221200-89224400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:89221600-89223400	Weak transcription	Brain Anterior Caudate	brain
5	chr3:89221600-89228600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:89221600-89233400	Weak transcription	Gastric	stomach
7	chr3:89221800-89226200	Weak transcription	Fetal Brain Male	brain
8	chr3:89221800-89228600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:89221800-89228800	Weak transcription	Brain Angular Gyrus	brain
10	chr3:89222000-89226400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:89222000-89228400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr3:89222000-89228400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:89222400-89223400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr3:89222400-89223400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:89222400-89224600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:89222400-89228400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr3:89222600-89233600	Weak transcription	Brain Germinal Matrix	brain
18	chr3:89222800-89223200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:89222800-89226800	Weak transcription	Fetal Brain Female	brain
20	chr3:89223000-89223600	Enhancers	HUES48 Cell Line	embryonic stem cell

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