Variant report

Variant	rs7617920
Chromosome Location	chr3:89226120-89226121
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13058886	0.81[AFR][1000 genomes]
rs13097212	0.81[AFR][1000 genomes]
rs13097548	0.81[AFR][1000 genomes]
rs34493897	0.81[AFR][1000 genomes]
rs6551395	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6551397	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6794682	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6797343	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71322858	0.81[AFR][1000 genomes]
rs7430987	0.81[AFR][1000 genomes]
rs7433634	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7633559	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310113	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310115	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9310116	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9851635	0.86[EUR][1000 genomes]
rs9866327	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834760	chr3:89085529-89299398	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv997874	chr3:89188275-89279573	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1008916	chr3:89206065-89241915	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89221600-89228600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:89221600-89233400	Weak transcription	Gastric	stomach
3	chr3:89221800-89226200	Weak transcription	Fetal Brain Male	brain
4	chr3:89221800-89228600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:89221800-89228800	Weak transcription	Brain Angular Gyrus	brain
6	chr3:89222000-89226400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:89222000-89228400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr3:89222000-89228400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:89222400-89228400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr3:89222600-89233600	Weak transcription	Brain Germinal Matrix	brain
11	chr3:89222800-89226800	Weak transcription	Fetal Brain Female	brain
12	chr3:89223400-89228600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:89223600-89228400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr3:89223600-89228600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:89223800-89228600	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr3:89224400-89226200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr3:89224400-89228800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr3:89224600-89228200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr3:89226000-89226400	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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