Variant report

Variant	rs9310116
Chromosome Location	chr3:89262931-89262932
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1040016	0.81[EUR][1000 genomes]
rs11916046	0.81[EUR][1000 genomes]
rs11916939	0.81[EUR][1000 genomes]
rs11920519	0.83[EUR][1000 genomes]
rs13060907	0.83[EUR][1000 genomes]
rs13097740	0.81[EUR][1000 genomes]
rs13100590	0.81[EUR][1000 genomes]
rs17026797	0.84[EUR][1000 genomes]
rs17026821	0.81[EUR][1000 genomes]
rs1996068	0.81[EUR][1000 genomes]
rs2346324	0.81[EUR][1000 genomes]
rs2346325	0.82[EUR][1000 genomes]
rs34046877	0.83[EUR][1000 genomes]
rs35532963	0.81[EUR][1000 genomes]
rs36076607	0.81[EUR][1000 genomes]
rs3946805	0.81[EUR][1000 genomes]
rs60475411	0.83[EUR][1000 genomes]
rs6551395	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6551397	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6777119	0.81[EUR][1000 genomes]
rs6791217	0.83[EUR][1000 genomes]
rs6794198	0.83[EUR][1000 genomes]
rs6794682	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6797343	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71322864	0.83[EUR][1000 genomes]
rs71322865	0.81[EUR][1000 genomes]
rs7433634	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7617920	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7629132	0.83[EUR][1000 genomes]
rs7633559	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9310113	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9310115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9866327	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834760	chr3:89085529-89299398	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv997874	chr3:89188275-89279573	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv437866	chr3:89247881-89480265	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2757001	chr3:89260495-89271087	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv2759160	chr3:89260495-89271087	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89250200-89263200	Weak transcription	Fetal Brain Female	brain
2	chr3:89259800-89263200	Weak transcription	Brain Germinal Matrix	brain
3	chr3:89259800-89266200	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:89259800-89266600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:89260400-89265800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:89262000-89263600	Weak transcription	Fetal Brain Male	brain
7	chr3:89262000-89264000	Enhancers	Fetal Lung	lung
8	chr3:89262400-89265800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr3:89262600-89263000	Weak transcription	Fetal Stomach	stomach

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