Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:23208542..23210812-chr3:23212932..23215034,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13067024	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17342904	0.93[JPT][hapmap]
rs28441035	0.83[ASN][1000 genomes]
rs28617316	0.83[ASN][1000 genomes]
rs28619078	0.84[ASN][1000 genomes]
rs34971719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4327331	0.91[JPT][hapmap]
rs58659333	1.00[ASN][1000 genomes]
rs6550742	0.83[ASN][1000 genomes]
rs6799137	0.97[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs73040063	0.86[ASN][1000 genomes]
rs73040068	0.86[ASN][1000 genomes]
rs73042198	0.94[ASN][1000 genomes]
rs73044320	0.96[ASN][1000 genomes]
rs73050239	0.99[ASN][1000 genomes]
rs73050248	0.99[ASN][1000 genomes]
rs73050286	0.84[ASN][1000 genomes]
rs73050291	0.83[ASN][1000 genomes]
rs7619223	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7640945	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9817417	0.83[ASN][1000 genomes]
rs9817740	0.83[ASN][1000 genomes]
rs9822814	0.83[ASN][1000 genomes]
rs9870844	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999882	chr3:23121533-23257718	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23213600-23216000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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