Variant report

Variant	rs9817417
Chromosome Location	chr3:23231196-23231197
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:23229817..23231730-chr3:23239013..23241977,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1054048	0.86[ASN][1000 genomes]
rs13067024	0.83[ASN][1000 genomes]
rs17342904	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28441035	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28617316	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28619078	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34971719	0.83[ASN][1000 genomes]
rs4327331	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57909730	0.90[ASN][1000 genomes]
rs58033276	0.93[ASN][1000 genomes]
rs58659333	0.83[ASN][1000 genomes]
rs6550742	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6774587	0.91[ASN][1000 genomes]
rs6774590	0.91[ASN][1000 genomes]
rs73033541	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73035699	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73037704	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73037723	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73037748	0.91[ASN][1000 genomes]
rs73039804	0.93[ASN][1000 genomes]
rs73050239	0.81[ASN][1000 genomes]
rs73050248	0.81[ASN][1000 genomes]
rs73050286	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73050291	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7619223	0.81[ASN][1000 genomes]
rs7640945	0.81[ASN][1000 genomes]
rs9817740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9822814	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9832445	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9859793	0.83[ASN][1000 genomes]
rs9870844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999882	chr3:23121533-23257718	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23230600-23231200	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr3:23231000-23231200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:23231000-23235200	Weak transcription	Primary monocytes fromperipheralblood	blood

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