Variant report

Variant	rs73035699
Chromosome Location	chr3:23302298-23302299
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1054048	0.91[ASN][1000 genomes]
rs17342904	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17405137	0.82[ASN][1000 genomes]
rs28441035	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28617316	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28619078	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4327331	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57909730	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58033276	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6550742	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6774587	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6774590	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73033541	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73037704	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73037723	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73037748	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73039804	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73041557	0.81[ASN][1000 genomes]
rs73050286	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73050291	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9817417	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9817740	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9822814	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9832445	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9870844	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv589947	chr3:23277838-23403943	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1002823	chr3:23277838-23623083	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv589948	chr3:23287141-23390221	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23292800-23304200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr3:23292800-23306800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:23293000-23303800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:23295200-23321800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:23297000-23307000	Weak transcription	Primary B cells from cord blood	blood
6	chr3:23298400-23305200	Weak transcription	HSMM	muscle
7	chr3:23298800-23304400	Weak transcription	Right Ventricle	heart
8	chr3:23298800-23311000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr3:23298800-23336600	Weak transcription	Thymus	Thymus
10	chr3:23299000-23304200	Weak transcription	Brain Hippocampus Middle	brain
11	chr3:23299000-23304400	Weak transcription	NHEK	skin
12	chr3:23299000-23306800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:23299000-23314200	Weak transcription	Primary T cells from cord blood	blood
14	chr3:23299800-23303800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:23299800-23304400	Weak transcription	NHDF-Ad	bronchial
16	chr3:23300000-23304200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr3:23300000-23304200	Weak transcription	Osteobl	bone
18	chr3:23300000-23304400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:23300000-23305400	Weak transcription	A549	lung
20	chr3:23300200-23305000	Weak transcription	NH-A	brain
21	chr3:23302000-23302400	Enhancers	Lung	lung
22	chr3:23302000-23302400	ZNF genes & repeats	Pancreas	Pancrea
23	chr3:23302000-23302400	Enhancers	Psoas Muscle	Psoas
24	chr3:23302000-23302400	Enhancers	Spleen	Spleen
25	chr3:23302200-23302400	Enhancers	Brain Anterior Caudate	brain
26	chr3:23302200-23302400	Enhancers	HMEC	breast
27	chr3:23302200-23302400	Enhancers	HSMMtube	muscle
28	chr3:23302200-23302600	Enhancers	Left Ventricle	heart
29	chr3:23302200-23302600	Enhancers	Ovary	ovary
30	chr3:23302200-23302600	Enhancers	Skeletal Muscle Male	skeletal muscle

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