Variant report

Variant	rs9832445
Chromosome Location	chr3:23237561-23237562
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1054048	0.86[ASN][1000 genomes]
rs17342904	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28441035	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28617316	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28619078	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4327331	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57909730	0.90[ASN][1000 genomes]
rs58033276	0.91[ASN][1000 genomes]
rs6550742	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6774587	0.88[ASN][1000 genomes]
rs6774590	0.88[ASN][1000 genomes]
rs73033541	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73035699	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73037704	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73037723	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73037748	0.89[ASN][1000 genomes]
rs73039804	0.91[ASN][1000 genomes]
rs73050286	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73050291	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9817417	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9817740	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9822814	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9870844	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999882	chr3:23121533-23257718	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23237000-23237600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr3:23237200-23237600	Enhancers	Right Atrium	heart
3	chr3:23237200-23237800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr3:23237200-23237800	Enhancers	Adipose Nuclei	Adipose
5	chr3:23237200-23237800	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr3:23237400-23237800	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr3:23237400-23237800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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