Variant report

Variant	rs4327331
Chromosome Location	chr3:23307217-23307218
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1054048	0.91[ASN][1000 genomes]
rs17342904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17405137	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs28441035	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28617316	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28619078	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57909730	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58033276	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6550742	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6774587	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6774590	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73033541	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73035699	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73037704	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73037723	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73037748	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73039804	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73041557	0.81[ASN][1000 genomes]
rs73050286	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73050291	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9817417	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9817740	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9822814	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9832445	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9870844	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv589947	chr3:23277838-23403943	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1002823	chr3:23277838-23623083	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv589948	chr3:23287141-23390221	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23295200-23321800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:23298800-23311000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:23298800-23336600	Weak transcription	Thymus	Thymus
4	chr3:23299000-23314200	Weak transcription	Primary T cells from cord blood	blood
5	chr3:23302400-23312800	Weak transcription	Lung	lung
6	chr3:23302400-23321000	Weak transcription	Pancreas	Pancrea
7	chr3:23304800-23310800	Weak transcription	Fetal Lung	lung
8	chr3:23305200-23311000	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:23305600-23318400	Weak transcription	Brain Substantia Nigra	brain
10	chr3:23306600-23311600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:23306800-23312800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:23306800-23314200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:23307000-23311000	Weak transcription	Primary B cells from peripheral blood	blood
14	chr3:23307200-23313200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:23307200-23313400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:23307200-23314400	Weak transcription	HSMMtube	muscle
17	chr3:23307200-23316000	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links