Variant report

Variant	rs28619078
Chromosome Location	chr3:23224978-23224979
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:23224924..23225833-chr3:73897073..73898303,5	MCF-7	breast:
2	chr3:23224961..23225741-chr3:23841911..23842898,2	MCF-7	breast:
3	chr3:23220511..23222117-chr3:23223792..23225535,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1054048	0.85[ASN][1000 genomes]
rs13067024	0.84[ASN][1000 genomes]
rs17342904	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28441035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28617316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34971719	0.84[ASN][1000 genomes]
rs4327331	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57909730	0.88[ASN][1000 genomes]
rs58033276	0.92[ASN][1000 genomes]
rs58659333	0.84[ASN][1000 genomes]
rs6550742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6774587	0.89[ASN][1000 genomes]
rs6774590	0.89[ASN][1000 genomes]
rs73033541	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73035699	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73037704	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73037723	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73037748	0.90[ASN][1000 genomes]
rs73039804	0.92[ASN][1000 genomes]
rs73044320	0.80[ASN][1000 genomes]
rs73050239	0.83[ASN][1000 genomes]
rs73050248	0.83[ASN][1000 genomes]
rs73050286	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73050291	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7619223	0.83[ASN][1000 genomes]
rs7640945	0.83[ASN][1000 genomes]
rs9817417	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9817740	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9822814	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9832445	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9859793	0.84[ASN][1000 genomes]
rs9870844	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999882	chr3:23121533-23257718	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23224400-23225000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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