Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1054048	0.87[ASN][1000 genomes]
rs17342904	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28441035	0.91[ASN][1000 genomes]
rs28617316	0.91[ASN][1000 genomes]
rs28619078	0.89[ASN][1000 genomes]
rs4327331	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57909730	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58033276	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6550742	0.91[ASN][1000 genomes]
rs6774587	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73033541	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73035699	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73037704	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73037723	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73037748	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73039804	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73050286	0.89[ASN][1000 genomes]
rs73050291	0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9817417	0.91[ASN][1000 genomes]
rs9817740	0.91[ASN][1000 genomes]
rs9822814	0.91[ASN][1000 genomes]
rs9832445	0.88[ASN][1000 genomes]
rs9870844	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv589947	chr3:23277838-23403943	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1002823	chr3:23277838-23623083	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv589948	chr3:23287141-23390221	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1004417	chr3:23318797-23389422	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv967177	chr3:23337450-23350050	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23337600-23358400	Weak transcription	Primary B cells from peripheral blood	blood
2	chr3:23343000-23347200	Weak transcription	Brain Hippocampus Middle	brain
3	chr3:23343200-23350200	Weak transcription	Psoas Muscle	Psoas
4	chr3:23343400-23346600	Weak transcription	Ovary	ovary
5	chr3:23343600-23344800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:23343600-23344800	Enhancers	HSMM	muscle
7	chr3:23343600-23347800	Enhancers	HSMMtube	muscle
8	chr3:23343800-23355200	Weak transcription	Aorta	Aorta
9	chr3:23344000-23345200	Weak transcription	Colon Smooth Muscle	Colon
10	chr3:23344200-23345200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr3:23344200-23345200	Weak transcription	A549	lung
12	chr3:23344200-23345600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:23344400-23345000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:23344400-23345600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr3:23344400-23346800	Enhancers	Fetal Lung	lung
16	chr3:23344600-23345600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr3:23344600-23346200	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr3:23344600-23346400	Weak transcription	Adipose Nuclei	Adipose
19	chr3:23344600-23353400	Weak transcription	Left Ventricle	heart
20	chr3:23344600-23356600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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