Variant report
| Variant | rs9867012 |
|---|---|
| Chromosome Location | chr3:82410718-82410719 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11916850 | 0.80[EUR][1000 genomes] |
| rs11921228 | 0.80[EUR][1000 genomes] |
| rs13067300 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1449852 | 0.80[EUR][1000 genomes] |
| rs1900993 | 1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap] |
| rs4856386 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6783087 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6786551 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6793570 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs6796468 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs6809919 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7626945 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9830712 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9841577 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs9848200 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9848744 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9855963 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs9866870 | 0.91[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs9869128 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9880194 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.93[MKK][hapmap];0.96[TSI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1008429 | chr3:82089650-82510536 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv432460 | chr3:82107110-82508010 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv1013820 | chr3:82175705-82968181 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 4 | nsv523771 | chr3:82363196-82412694 | Enhancers Active TSS Weak transcription Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:82406200-82412600 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
| 2 | chr3:82410600-82412400 | Weak transcription | H9 Cell Line | embryonic stem cell |
